PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00136251001
Common NameGSBRNA2T00136251001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NF-X1
Protein Properties Length: 883aa    MW: 98856.3 Da    PI: 8.3684
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00136251001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X116.81.4e-05197215120
             zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                          CG H+C  lCH+GpC +Cp+
  GSBRNA2T00136251001 197 CG-HRCLLLCHPGPCASCPK 215
                          **.***************96 PP
2zf-NF-X117.77.5e-06240268220
             zf-NF-X1   2 G..........kHkCqklCHeGpCppCpq 20 
                          G          +H+C ++CH G+CppC++
  GSBRNA2T00136251001 240 GdvcdkvldceIHSCREICHDGECPPCRE 268
                          555555555559***************85 PP
3zf-NF-X118.64.2e-06430454119
             zf-NF-X1   1 CG......kHkCqklCHeGpCppCp 19 
                          CG      +HkCq++CH+G+C pCp
  GSBRNA2T00136251001 430 CGkklkcrNHKCQSPCHRGQCAPCP 454
                          777777779***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS01359089150IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500898.69889151IPR001841Zinc finger, RING-type
CDDcd060081.54E-4185233No hitNo description
SMARTSM004380.056197215IPR000967Zinc finger, NF-X1-type
PfamPF014220.0045197214IPR000967Zinc finger, NF-X1-type
CDDcd060081.01E-8239287No hitNo description
SMARTSM004382.5E-4249268IPR000967Zinc finger, NF-X1-type
PfamPF014220.0016251267IPR000967Zinc finger, NF-X1-type
CDDcd060081.81E-6292332No hitNo description
SMARTSM004380.05302321IPR000967Zinc finger, NF-X1-type
PfamPF014220.064302320IPR000967Zinc finger, NF-X1-type
CDDcd060083.46E-8346395No hitNo description
SMARTSM004380.075356376IPR000967Zinc finger, NF-X1-type
PfamPF014220.0022356375IPR000967Zinc finger, NF-X1-type
SMARTSM004380.051409428IPR000967Zinc finger, NF-X1-type
PfamPF014220.0093409427IPR000967Zinc finger, NF-X1-type
CDDcd060087.22E-11426474No hitNo description
PfamPF014229.6E-4430454IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0013436455IPR000967Zinc finger, NF-X1-type
SMARTSM00438110493514IPR000967Zinc finger, NF-X1-type
PfamPF014224.8503513IPR000967Zinc finger, NF-X1-type
SMARTSM00438190522567IPR000967Zinc finger, NF-X1-type
PfamPF0142277522531IPR000967Zinc finger, NF-X1-type
SMARTSM004389.2604635IPR000967Zinc finger, NF-X1-type
PfamPF014220.078604615IPR000967Zinc finger, NF-X1-type
SMARTSM004380.41645663IPR000967Zinc finger, NF-X1-type
PfamPF0142217646662IPR000967Zinc finger, NF-X1-type
SMARTSM0043823708737IPR000967Zinc finger, NF-X1-type
PfamPF014228.1710722IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 883 aa     Download sequence    Send to blast
MAGSATTTEF RWKPPPQPQP PTQQQNISDS DSDSGSDSDN NHQQNRHNDL SNSIFKAYLD  60
CHSSSSPSSL DLSKIQSFLS SSSSGAVSCL ICLERIKRTD PTWSCTSSCF AVFHLFCIQN  120
WARQCLDVHA ALAVTRPSTE TEPVWNCPKC RSSYLKSKIP SRYLCYCGKE EDPPADNPWI  180
LPHSCGEVCE RGLSNNCGHR CLLLCHPGPC ASCPKLVKSK CFCGGVEDVR RCGHKLFSCG  240
DVCDKVLDCE IHSCREICHD GECPPCRERA VYRCCCGKVE EEKDCCERVF RCEGSCESKL  300
NCGKHVCERG CHAGECGLCP YQGKRSCPCG KKFYQGLSCD VAAPLCGGTC DKVLGCGYHR  360
CPERCHRGAC LETCRIVVTK SCRCGGTKKQ VPCRQDVVCE RKCQRMRGCG KHPCRRRCCD  420
GQCPPCSEIC GKKLKCRNHK CQSPCHRGQC APCPIMVSIS CACGHTRFEV PCGTENNQRP  480
PRCRKLCNIT PLCRHGQIQK PHKCHYGACP PCRLPCDEEY PCGHKCKLRC HGPRPPPNRE  540
FILKPTKKML NVHVESTPGS PCPRCPELVW RPCVGHHLAA ERMMVCSDKT QFACDNLCGN  600
PLPCGNHYCS FTCHPLEIKS SSLDKRSESC EKCELRCQKE RSPKCQHPCP RRCHPEDCPP  660
CKTLVKRSCH CGAMVHAFEC IEYNTLSEQE QSKARSCRGP CHRKLPNCTH LCPEICHPGQ  720
CPSPEKCGKK VVVRCKCLTL KKEWLCKDVQ AAHRATGSDP KDVQKNHFGV GLLPCDSNCK  780
SKQQMAESVL QQRNVKEIEE KEEPSGKNAT KRRKRRERGQ DIKETSRLQK LTVAAKKVVM  840
VVMLIAVLVA VSYYGYKGIL WLSDWMNEVE EQRQKSRRYP RI*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.227920.0bud
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Constitutively expressed in mesophyll and guard cells. {ECO:0000269|PubMed:22073231}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00136251001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013715646.10.0NF-X1-type zinc finger protein NFXL2-like
SwissprotQ9FFK80.0NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLA0A397XNQ30.0A0A397XNQ3_BRACM; Uncharacterized protein
STRINGBo9g177030.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM109542730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.10.0sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]