PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00136181001
Common NameGSBRNA2T00136181001, LOC106419047
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 341aa    MW: 37972.4 Da    PI: 8.6648
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00136181001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.35.4e-18189243256
                          T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          rk+ +++k+q   Le+ F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  GSBRNA2T00136181001 189 RKKLRLSKDQSAFLEDSFKEHSTLNPKQKIALAKQLNLRPRQVEVWFQNRRARTK 243
                          678899***********************************************98 PP
2HD-ZIP_I/II128.62.6e-41189279192
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                          +kk+rlsk+q+++LE+sF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +
  GSBRNA2T00136181001 189 RKKLRLSKDQSAFLEDSFKEHSTLNPKQKIALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCESLTEENRRLQKEVKELR-A 277
                          69*************************************************************************************9.5 PP

          HD-ZIP_I/II  91 lk 92 
                          lk
  GSBRNA2T00136181001 278 LK 279
                          55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.8E-17173239IPR009057Homeodomain-like
SuperFamilySSF466893.8E-18180246IPR009057Homeodomain-like
PROSITE profilePS5007116.908185245IPR001356Homeobox domain
SMARTSM003892.5E-16187249IPR001356Homeobox domain
CDDcd000861.04E-15189246No hitNo description
PfamPF000462.3E-15189243IPR001356Homeobox domain
PROSITE patternPS000270220243IPR017970Homeobox, conserved site
PfamPF021832.8E-11245279IPR003106Leucine zipper, homeobox-associated
SMARTSM003408.1E-26245288IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MELALCLGDN TNKFSFMEKP SKTNNNPSAS STSTSYKDLG FNMGLDVLGF GGHRSLSSSS  60
SPSMEDEKNK NKRKLAPKEI DSDGFRVSSS VDPSLQLQLH FPWLPENSRQ GGRMLSGATT  120
FPEEEEEAAL SMSVSPPDSV TSSFRLDFGI KSYGYERRNN KRGNENDEVE RSTSRASNED  180
NDDDNGATRK KLRLSKDQSA FLEDSFKEHS TLNPKQKIAL AKQLNLRPRQ VEVWFQNRRA  240
RTKLKQTEVD CEYLKRCCES LTEENRRLQK EVKELRALKT SSPFCMQLPA TTLTMCPSCE  300
RVATSVSQPS STSAAHNIDL SKSSFHSPLI PVKPGPGKQV *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1187193TRKKLRL
2237245RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00136181001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009122282.10.0PREDICTED: homeobox-leucine zipper protein HAT14
RefseqXP_013715248.10.0homeobox-leucine zipper protein HAT14
SwissprotP466651e-173HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLM4CYC20.0M4CYC2_BRARP; Uncharacterized protein
STRINGBra009219.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49282852
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.11e-163homeobox from Arabidopsis thaliana
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]