PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00136168001

Common Name

GSBRNA2T00136168001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

G2-like

Protein Properties

Length: 375aa MW: 42216.3 Da PI: 7.806

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00136168001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	99.7	1.9e-31	197	251	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWt++LH++Fve+v+ LGG++kAtPk+il+lm+ +gLt+ hvkSHLQkYR+ GSBRNA2T00136168001 197 KTRIRWTQDLHDKFVECVNLLGGADKATPKAILKLMDSEGLTIFHVKSHLQKYRI 251 68****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.234	194	254	IPR017930	Myb domain
SuperFamily	SSF46689	5.73E-17	196	251	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.2E-27	196	252	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.2E-23	197	252	IPR006447	Myb domain, plants
Pfam	PF00249	4.2E-8	201	250	IPR001005	SANT/Myb domain
Pfam	PF14379	2.5E-20	280	326	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence Send to blast
MDNINYESSN ASQGSRLQLP PHPQPPQPFN LQDVNMIHYN QSSPLTIETF SGLPPYDCTA 60 NQSLPVQCSS SNPYPPLFHP CHHQASASLS LDQSQSMVPM QPLQDHHYLK PLYQRSCAND 120 FSATNASSAS YSLSFEASQD PQELCRRTYS NSNVTQLNFS SSHHQPKQTL SRFSSHSSFS 180 THGGFMASNS GAVIGNKTRI RWTQDLHDKF VECVNLLGGA DKATPKAILK LMDSEGLTIF 240 HVKSHLQKYR IAKYIPDSQE GKFEKINCSK ELLDTKTGAH IKEALQLQLD VQRHLHEQLE 300 IQRNLQLRIE EQGKQLKIMI EQQQKTKECL LKTPNAEVSL SHSDSDHSIL RQSQYKKPKP 360 CCSQDMETVN SNQR*

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence Send to blast

MDNINYESSN ASQGSRLQLP PHPQPPQPFN LQDVNMIHYN QSSPLTIETF SGLPPYDCTA  60
NQSLPVQCSS SNPYPPLFHP CHHQASASLS LDQSQSMVPM QPLQDHHYLK PLYQRSCAND  120
FSATNASSAS YSLSFEASQD PQELCRRTYS NSNVTQLNFS SSHHQPKQTL SRFSSHSSFS  180
THGGFMASNS GAVIGNKTRI RWTQDLHDKF VECVNLLGGA DKATPKAILK LMDSEGLTIF  240
HVKSHLQKYR IAKYIPDSQE GKFEKINCSK ELLDTKTGAH IKEALQLQLD VQRHLHEQLE  300
IQRNLQLRIE EQGKQLKIMI EQQQKTKECL LKTPNAEVSL SHSDSDHSIL RQSQYKKPKP  360
CCSQDMETVN SNQR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-22	197	254	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-22	197	254	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-22	197	254	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-22	197	254	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-22	197	254	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-22	197	254	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-22	197	254	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-22	197	254	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00136168001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013715394.1	0.0	myb family transcription factor PHL5-like
Refseq	XP_018510816.1	0.0	PREDICTED: myb family transcription factor PHL5-like
Swissprot	Q0WVU3	1e-179	PHL5_ARATH; Myb family transcription factor PHL5
TrEMBL	A0A397XNE6	0.0	A0A397XNE6_BRACM; Uncharacterized protein
STRING	Bra009228.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5476	27	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06800.1	1e-155	G2-like family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]