PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00136165001
Common NameGSBRNA2T00136165001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family G2-like
Protein Properties Length: 705aa    MW: 80490.8 Da    PI: 8.0515
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00136165001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like33.87.6e-1178106129
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtP 29 
                          k+r++Wt++LH++Fve+v++LGG+ ++  
  GSBRNA2T00136165001  78 KTRIKWTTDLHDKFVECVNHLGGPMRTSL 106
                          68**********************98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-678106IPR009057Homeodomain-like
PfamPF025363.1E-7292422IPR003690Transcription termination factor, mitochondrial/chloroplastic
SMARTSM0073392306336IPR003690Transcription termination factor, mitochondrial/chloroplastic
SMARTSM007339.7341372IPR003690Transcription termination factor, mitochondrial/chloroplastic
PfamPF025369.2E-6395522IPR003690Transcription termination factor, mitochondrial/chloroplastic
SMARTSM00733530445476IPR003690Transcription termination factor, mitochondrial/chloroplastic
SMARTSM00733710562592IPR003690Transcription termination factor, mitochondrial/chloroplastic
PfamPF025361.0E-15578680IPR003690Transcription termination factor, mitochondrial/chloroplastic
SMARTSM007330.13597628IPR003690Transcription termination factor, mitochondrial/chloroplastic
SMARTSM007332200629660IPR003690Transcription termination factor, mitochondrial/chloroplastic
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005739Cellular Componentmitochondrion
GO:0009536Cellular Componentplastid
GO:0003690Molecular Functiondouble-stranded DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 705 aa     Download sequence    Send to blast
MKFGRRHASD NDPSHEMCSE QATHCCKCYD ISEIFSTETR QTTSLSKQSS ECVETDISTP  60
EPAGSSLASE FTSSSPIKTR IKWTTDLHDK FVECVNHLGG PMRTSLKEEE IHLEGSGIKE  120
FMRLQDKVGQ HLQEQLENQA MTLARNPSRF TTLLKRLSHL SVENPFTPPS SATQKPRSFA  180
TQRTRNGIRV TPTIRKMAEE AMLDYFYSTR SLQYMVAESM SKNSPIFIEN LLKKVSCVSA  240
SDINQSITKH LRFHPVNEFE PFLESSGLKP DEYTHLIPSG EIFLNELLLE NHHVLCYCGV  300
DPKKIGKIFE EARDVFGYET GVLASKIKVY EDFGFSRLFL SKLIACCPRM LVGGTDMELV  360
KVIEKLRAIG IDSDWVMKNL SEEVSYNWSS VHCALTLLRV VCNDENELYR LIKNYPRLIF  420
ESSGRWTLIL VGFETKLGLS ARELYSLFQK LPQMQVEKCV SNLRRCFLFL KEIDMEDDEI  480
QKVFRSHSWW ISSCTLKKTS SLLVNLKAYK TRVCKAVKEN PEEMKKWTMG SKVQPLPATE  540
VYLDSKAMKT QFLLDLGYVE GSEEMERAGK SFRGRGSELK ERFDVLVRFG LDEVDVKEMV  600
KASPNILTQA SDVLETKVRY LVEELGYPLS TLVTFPSCLK FTLERMKVRF AMFAWLKGRG  660
KADPKLAVST LLACSDKDFA RYFVSRHPDG PKHLEDLKKK QQLL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00136165001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009122299.10.0PREDICTED: transcription termination factor MTEF18, mitochondrial
TrEMBLM4CYD30.0M4CYD3_BRARP; Uncharacterized protein
STRINGBra009230.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM512923
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.25e-08G2-like family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]