PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00136022001 | ||||||||
Common Name | GSBRNA2T00136022001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB | ||||||||
Protein Properties | Length: 295aa MW: 31587.9 Da PI: 6.4259 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.9 | 2.6e-09 | 11 | 55 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 +W+ e+d + +a + + + W++Ia+ ++ g++ q+k+++ GSBRNA2T00136022001 11 AWSREDDIAFERALANHTDEseeKWEKIAADVP-GKSVDQIKEHYE 55 7*****************99*************.**********95 PP | |||||||
2 | Myb_DNA-binding | 40.6 | 6.1e-13 | 112 | 156 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +W+++E+ l++ + ++G+g+W++I+r + +Rt+ q+ s+ qky GSBRNA2T00136022001 112 AWSEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKY 156 6*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 7.977 | 7 | 62 | IPR017884 | SANT domain |
SMART | SM00717 | 6.7E-8 | 8 | 60 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.3E-8 | 11 | 55 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.32E-8 | 11 | 58 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-5 | 11 | 54 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.3E-9 | 12 | 65 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.139 | 104 | 161 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.88E-16 | 107 | 162 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.6E-10 | 109 | 159 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 9.1E-17 | 109 | 159 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 6.0E-11 | 112 | 156 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.75E-9 | 112 | 157 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.2E-10 | 112 | 155 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence Send to blast |
MTVEEVSDGS AWSREDDIAF ERALANHTDE SEEKWEKIAA DVPGKSVDQI KEHYELLVED 60 VDRIESGCVP LPSYRSPLDD AGDDGGSSKR GGNSHDQGSK AKADQERRKG IAWSEDEHRL 120 FLLGLDKYGK GDWRSISRNF VVTRTPTQVA SHAQKYFIRL NSMNKDRRRS SIHDITSVGD 180 ADVSTPQGPI TGQNQNNNTN NTGSAAVVGG GNKSAKQPAS QPTPGPPMYG TPTIGQPVSG 240 PLVSAVGTPV NLPAPPHMAY GVHSAPVPGS VVPGAPMNMA QMPYTMPRTP TAHR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 2e-15 | 9 | 76 | 8 | 75 | RADIALIS |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.12950 | 0.0 | microspore| seed |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young seedlings, developing leaves, sepals and trichomes. {ECO:0000269|PubMed:26243618}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00500 | DAP | Transfer from AT5G08520 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00136022001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK352981 | 0.0 | AK352981.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-15-N01. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009122461.1 | 0.0 | PREDICTED: transcription factor DIVARICATA | ||||
Swissprot | Q9FNN6 | 1e-173 | SRM1_ARATH; Transcription factor SRM1 | ||||
TrEMBL | M4CYP9 | 0.0 | M4CYP9_BRARP; Uncharacterized protein | ||||
STRING | Bra009346.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3556 | 28 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08520.1 | 1e-149 | MYB family protein |
Publications ? help Back to Top | |||
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