PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00135984001 | ||||||||
Common Name | GSBRNA2T00135984001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NAC | ||||||||
Protein Properties | Length: 439aa MW: 48611.3 Da PI: 4.5753 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 155.2 | 2.8e-48 | 6 | 134 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 l+pGfrFhPtd elv +yLk+kv gkkl + ++i+e+diyk+eP+dLp k +k+++ +w+fF++r+kkyatg r+nrat+ gyWk+tgk GSBRNA2T00135984001 6 LAPGFRFHPTDVELVRYYLKRKVLGKKLLV-DAIAELDIYKFEPSDLPdKsYIKSGDLKWHFFCPREKKYATGVRANRATECGYWKTTGK 94 579************************999.89**************96347778888******************************** PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 +++vl+ +ge vg ktLv++ g++p+ge+tdWvmheyrle GSBRNA2T00135984001 95 ERAVLC-NGESVGKIKTLVYHVGKSPRGERTDWVMHEYRLE 134 ******.999*****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.62E-57 | 3 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 52.689 | 6 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.8E-26 | 8 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 439 aa Download sequence Send to blast |
MGKTELAPGF RFHPTDVELV RYYLKRKVLG KKLLVDAIAE LDIYKFEPSD LPDKSYIKSG 60 DLKWHFFCPR EKKYATGVRA NRATECGYWK TTGKERAVLC NGESVGKIKT LVYHVGKSPR 120 GERTDWVMHE YRLEDNVLTQ KNIPQDTYVL CVLFKKDGPG PRNGAQYGAP FKEEDWSDEE 180 HRTGVDVPST SNASIFLHGP NAETSLSMAP SLPPNKDCFG GMISESCVSD FPPATATASM 240 TAHLTDAANA PVPAPLLDPS SSTSLAQTLQ APNDDDDLYA MLDLFVDEDE FLPLSEPNTN 300 EARHVPNVSA PISFGEEVIF DDLPDFSNMH NNNIMPRTPS YDLIENSELY LELQDLTAPL 360 APPHVWNVSD SYLTAPLAPP QVGRNVSDSY LTAPLAPPQN GNVSEPFLNH QGHFDFSAAA 420 ANDDPYSFLR PWDNTDQR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-43 | 6 | 156 | 15 | 168 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.6199 | 0.0 | root| seed |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the epidermal cells of the root apical region. {ECO:0000269|PubMed:20388856}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that binds specific DNA sequences on the promoter regions of target genes. {ECO:0000250|UniProtKB:Q9C8W9}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00135984001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC966758 | 0.0 | KC966758.1 Brassica napus NAC transcription factor 82 (NAC82.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009122507.1 | 0.0 | PREDICTED: NAC domain-containing protein 82 | ||||
Refseq | XP_009122509.1 | 0.0 | PREDICTED: NAC domain-containing protein 82 | ||||
Swissprot | Q9FY82 | 0.0 | NAC82_ARATH; NAC domain-containing protein 82 | ||||
TrEMBL | A0A3P6CNG2 | 0.0 | A0A3P6CNG2_BRACM; Uncharacterized protein | ||||
TrEMBL | M4CYT2 | 0.0 | M4CYT2_BRARP; Uncharacterized protein | ||||
STRING | Bra009379.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3692 | 25 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G09330.4 | 1e-171 | NAC domain containing protein 82 |
Publications ? help Back to Top | |||
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