PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00135885001
Common NameGSBRNA2T00135885001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family AP2
Protein Properties Length: 561aa    MW: 62254.7 Da    PI: 6.7127
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00135885001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.79.2e-16375426155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  GSBRNA2T00135885001 375 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 426
                          57****************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.40E-15250342No hitNo description
SMARTSM003807.5E-19251346IPR001471AP2/ERF domain
PROSITE profilePS5103215.923251340IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.5E-12251340IPR001471AP2/ERF domain
SuperFamilySSF541713.99E-8307341IPR016177DNA-binding domain
PfamPF008473.8E-10375426IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-17375435IPR016177DNA-binding domain
CDDcd000183.88E-11375434No hitNo description
SMARTSM003807.9E-31376440IPR001471AP2/ERF domain
PROSITE profilePS5103219.111376434IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.2E-18376434IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 561 aa     Download sequence    Send to blast
MAPMTNWLTF SLSPMEMLRS SDDQSQFVSY DASSAASSSP YLLDNFYGWT NQKPQELFFK  60
EAAAASMADS TILTTFVDSQ THSQSHIPKL EDFLGGDVRY SDNSQSETQD SSSLSQIYDP  120
RHHQNQNQNQ TGFYSDHNPD FNKTMAGFQT AFSTNSGSEV DDSASIARTH LAGEYLGHVV  180
ESSGPELGFH GGASTGGALS LGVNINNANH RTSNDTNQIT EHHYNKPVVT VETSDCSNKK  240
VADTFGQRTS IYRGVTRHRW TGRYEAHLWD NSCRREGQAR KGRQGIHFFF FFNLISILLL  300
QTFLNILIYL GGYDKEDKAA RAYDLAALKY WNAAATTNFP IANYSKELEE MKHMTKLEFI  360
ASLRRKSSGF SRGASIYRGV TRHHQQGRWQ ARIGRVAGNK DLYLGTFATE EEAAEAYDIA  420
AIKFRGINAV TNFEMNRYDV EAIMKSALPI GGAAKRLKLS LESAASAEQK PNSSTNNSSI  480
NFALCPNSDV QSQMIPCGIP FDAAALYHHQ QQQQQQNFFQ HFHAASDSAA SNNNNSNVQG  540
SMGLMAPNAA EFFLWPNQSY *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.60101e-114seed
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detected in inflorescence and youg floral mersitems, and in stem procambial cells. In floral mersitems, mostly expressed in the central dome. Disappears progressively from sepal primordia, but accumulates in second, third and fourth whorl organ primordia. Later, confined to occasional patches in stamens and in petal before disparearing progressively from flowers. {ECO:0000269|PubMed:15988559}.
UniprotTISSUE SPECIFICITY: Expressed in roots, seedlings, hypocotyl, inflorescence, siliques, and pistils. Also detected at low levels in leaves. {ECO:0000269|PubMed:15988559, ECO:0000269|PubMed:16307362}.
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00135885001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB3003130.0AB300313.1 Brassica rapa BcAP2 mRNA for AP2/EREBP transcription factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013668132.10.0AP2-like ethylene-responsive transcription factor AIL6
SwissprotQ52QU20.0AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6
TrEMBLA0A3P6DCR60.0A0A3P6DCR6_BRACM; Uncharacterized protein
STRINGBra009026.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33332765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.30.0AINTEGUMENTA-like 6
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Krizek BA
    Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers.
    BMC Res Notes, 2015. 8: p. 556
    [PMID:26459062]
  3. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  4. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]