PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00135602001
Common NameGSBRNA2T00135602001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 268aa    MW: 30703.8 Da    PI: 6.3145
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00135602001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.82.4e-131461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg+WT eEd +l + +   G ++W+ +++  g+ R++k+c++rw +yl
  GSBRNA2T00135602001 14 RGPWTIEEDHRLMNFILNNGIHCWRVVPKLAGLLRCGKSCRLRWINYL 61
                         89******************************99************97 PP
2Myb_DNA-binding54.92.1e-1767110146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rg +T  E++++ +++ qlG++ W++Ia++++ gRt++++k++w++
  GSBRNA2T00135602001  67 RGGFTDAEEDRIMELHSQLGNR-WSKIASHFP-GRTDNEIKNHWNT 110
                          788*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.9E-20564IPR009057Homeodomain-like
PROSITE profilePS5129412.95961IPR017930Myb domain
SuperFamilySSF466894.03E-2811108IPR009057Homeodomain-like
SMARTSM007176.4E-61363IPR001005SANT/Myb domain
PfamPF002491.3E-111461IPR001005SANT/Myb domain
CDDcd001673.39E-41661No hitNo description
PROSITE profilePS5129426.09662116IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.8E-2665117IPR009057Homeodomain-like
SMARTSM007174.4E-1566114IPR001005SANT/Myb domain
PfamPF002493.4E-1567110IPR001005SANT/Myb domain
CDDcd001675.03E-1070110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MGRKPCCEKI GLKRGPWTIE EDHRLMNFIL NNGIHCWRVV PKLAGLLRCG KSCRLRWINY  60
LRPDLKRGGF TDAEEDRIME LHSQLGNRWS KIASHFPGRT DNEIKNHWNT KIKKKMKHLG  120
LNQAAHEPIH SITSRTESKQ ITNPNMSSTI KEKEETKEQP KDDVIIETTK PLIVSNNDEE  180
IQAENCKTLY AEEVDIGSLF AMQDNEISIS SSSFSSLYSN ISRSESSSYL AGDSISLEQW  240
DLDMTDPLVP WDLFTNLDDT LFLYDKM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-27121165108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00135602001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895640.0AC189564.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH009B23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022548756.10.0myb-related protein 315-like
TrEMBLA0A3P6CM600.0A0A3P6CM60_BRACM; Uncharacterized protein
STRINGBra008764.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14340.11e-128myb domain protein 40
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]