PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00135553001

Common Name

GSBRNA2T00135553001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

WRKY

Protein Properties

Length: 552aa MW: 59699.8 Da PI: 6.3601

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00135553001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	94.7	6.4e-30	231	290	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a gCpv+k+v+r+aed +++++tYeg+H h+ GSBRNA2T00135553001 231 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApGCPVRKQVQRCAEDMSILITTYEGTHSHP 290 58*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.2E-31	216	292	IPR003657	WRKY domain
SuperFamily	SSF118290	2.09E-27	224	292	IPR003657	WRKY domain
PROSITE profile	PS50811	28.69	226	292	IPR003657	WRKY domain
SMART	SM00774	1.5E-36	231	291	IPR003657	WRKY domain
Pfam	PF03106	6.7E-27	232	290	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 552 aa Download sequence Send to blast
MEVILKLPTS DSLLKDKVLG SAQIHEATKV EEDHQELESA KAEMCEVKEE NEKLKGMLER 60 IESDYKTLKL RFFDIIHQEE PSNNQTQDQN MIDLPKATTD LSSLDQEREL VSLSLGRRSS 120 SPSDNSSKKE EKTDATSKKV NDDEELTKAG LTLGFNSGNG RDPSVANPAN SSLENNLEDA 180 PGETWPPTKV TGKRSSPAPA SGGDVDGEGG QQNPVKRARV CVRARCDTPT MNDGCQWRKY 240 GQKIAKGNPC PRAYYRCTVA PGCPVRKQVQ RCAEDMSILI TTYEGTHSHP LPLSATTMAS 300 TTSAAASMLL SGSSLSSAAE MIGNNLYDNS RFINNNSNKS FYSPTLHSPL HPTVTLDLTT 360 PQHSSSSLSS LNFNKFPNSF QRFPSTSLNF SSNSSSSNSS LLNQPATWGN GYSSYTPYPY 420 NNVQFGTSNQ VKTVQNNQSL TETLTKALTS DPSFHSVIAA AISSMVGSNG EQQMVGPRHP 480 TSDSVQRTAA TENNKGRGGY FSSLLMSNII ANNQTGASLD QPSSQLTSLS MFNNSSSSSS 540 TTSFVNKEEK S*

Sequence ? help Back to Top

Protein Sequence Length: 552 aa Download sequence Send to blast

MEVILKLPTS DSLLKDKVLG SAQIHEATKV EEDHQELESA KAEMCEVKEE NEKLKGMLER  60
IESDYKTLKL RFFDIIHQEE PSNNQTQDQN MIDLPKATTD LSSLDQEREL VSLSLGRRSS  120
SPSDNSSKKE EKTDATSKKV NDDEELTKAG LTLGFNSGNG RDPSVANPAN SSLENNLEDA  180
PGETWPPTKV TGKRSSPAPA SGGDVDGEGG QQNPVKRARV CVRARCDTPT MNDGCQWRKY  240
GQKIAKGNPC PRAYYRCTVA PGCPVRKQVQ RCAEDMSILI TTYEGTHSHP LPLSATTMAS  300
TTSAAASMLL SGSSLSSAAE MIGNNLYDNS RFINNNSNKS FYSPTLHSPL HPTVTLDLTT  360
PQHSSSSLSS LNFNKFPNSF QRFPSTSLNF SSNSSSSNSS LLNQPATWGN GYSSYTPYPY  420
NNVQFGTSNQ VKTVQNNQSL TETLTKALTS DPSFHSVIAA AISSMVGSNG EQQMVGPRHP  480
TSDSVQRTAA TENNKGRGGY FSSLLMSNII ANNQTGASLD QPSSQLTSLS MFNNSSSSSS  540
TTSFVNKEEK S*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	1e-21	218	292	1	74	WRKY transcription factor 1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.24741	0.0	root

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00135553001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF430078	0.0	KF430078.1 Brassica rapa WRKY transcription factor 72 (WRKY72) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001288849.1	0.0	probable WRKY transcription factor 72
Refseq	XP_013667722.1	0.0	probable WRKY transcription factor 72
Swissprot	Q9LXG8	0.0	WRK72_ARATH; Probable WRKY transcription factor 72
TrEMBL	V5RG82	0.0	V5RG82_BRACM; WRKY transcription factor 72
STRING	Bra008719.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2959	28	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15130.1	0.0	WRKY DNA-binding protein 72

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]