PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00135551001
Common NameGSBRNA2T00135551001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 433aa    MW: 46111.6 Da    PI: 8.0523
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00135551001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.56.5e-29112171159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          ++Dg++WrKYGqK  kg+++pr+YYrCt a gCpv+ +v+r+aed +++++tYeg+H h+
  GSBRNA2T00135551001 112 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApGCPVRTQVQRCAEDMSILITTYEGTHSHP 171
                          58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-3097173IPR003657WRKY domain
SuperFamilySSF1182901.27E-26105173IPR003657WRKY domain
PROSITE profilePS5081128.001107173IPR003657WRKY domain
SMARTSM007743.9E-34112172IPR003657WRKY domain
PfamPF031069.3E-26113171IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MREVDNSSKK EEKTDATSKK VNDDEELTKA GLTLGFNSGN GPDPSVANPA NSSLENNLED  60
APGETWPPTK VTGKRSSPAP ASGGDVDGEG GQQNPVKRAR VCVRARCDTP TMNDGCQWRK  120
YGQKIAKGNP CPRAYYRCTV APGCPVRTQV QRCAEDMSIL ITTYEGTHSH PLPLSATTMA  180
STTSAAASML LSGSSLSSAA EMIGNNLYDN SRFINNNSNK SFYSPTLHSP LHPTVTLDLT  240
APQHSSSSLP SLNFNKFPNS FQRFPSTSLN FSSNSSSSNS SLLNQPATWG NGYSSYTPYP  300
YNNVQFGTSN QVKTVQNNQS LTETLTKALT SDPSFHSVIA AAISSMVGSN GEQQMVGPRH  360
PTSDSVQRTA ATENNKGRGG YFSSLLMSNI IANNQTGASL DQPSSQLTSL SMFNNSSSSS  420
STTSFVNKEE KS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-211121731777Probable WRKY transcription factor 4
2lex_A4e-211121731777Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.247410.0root
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00135551001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4300780.0KF430078.1 Brassica rapa WRKY transcription factor 72 (WRKY72) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001288849.10.0probable WRKY transcription factor 72
RefseqXP_013667721.10.0probable WRKY transcription factor 72
RefseqXP_013667722.10.0probable WRKY transcription factor 72
SwissprotQ9LXG80.0WRK72_ARATH; Probable WRKY transcription factor 72
TrEMBLM4CWX20.0M4CWX2_BRARP; Uncharacterized protein
STRINGBra008719.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29592868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.10.0WRKY DNA-binding protein 72
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]