PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00135548001 | ||||||||
Common Name | GSBRNA2T00135548001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 310aa MW: 35941.9 Da PI: 6.6803 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57 | 3.2e-18 | 114 | 166 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + +++ eq+ +Le+ Fe +++ e++ +LAk lgL+ rq+ +WFqNrRa++k GSBRNA2T00135548001 114 KKRLSLEQVMALEKSFELGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWK 166 556899**********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 128.3 | 3.1e-41 | 112 | 203 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 ekk+rls eqv +LE+sFe +kLeperK++la++Lglqprq+a+WFqnrRAR+ktkqlE+dy++Lk+++d lk++n++L +++++L++e GSBRNA2T00135548001 112 EKKKRLSLEQVMALEKSFELGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWKTKQLERDYDSLKKQFDVLKSDNDSLLANNKKLHAE 201 69**************************************************************************************99 PP HD-ZIP_I/II 91 lk 92 l GSBRNA2T00135548001 202 LV 203 86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.46E-19 | 105 | 170 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 7.1E-18 | 111 | 172 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 16.584 | 112 | 168 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.39E-16 | 113 | 169 | No hit | No description |
Pfam | PF00046 | 2.1E-15 | 114 | 166 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-19 | 115 | 176 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.1E-5 | 139 | 148 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 143 | 166 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.1E-5 | 148 | 164 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 4.5E-14 | 168 | 207 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 310 aa Download sequence Send to blast |
MYMYEEERNN IANNQERLRL EMAFPQHGFM FQQLHEDNTH HLPSPTSLPS CPPHLFYGGG 60 NYMMNRSMSF TGVSDHHHLT QKSPTTTNMH DQDQVGEEDN LSDDGSHMIL GEKKKRLSLE 120 QVMALEKSFE LGNKLEPERK MQLAKALGLQ PRQIAIWFQN RRARWKTKQL ERDYDSLKKQ 180 FDVLKSDNDS LLANNKKLHA ELVALKKQDR QESAKIKREI AEASWSNNES TENDNNNSDI 240 NHVNMIKDLF PSSIRSATTT TTSAHIDHQM VQDQGFCNMF SSIDETTSGS YWTWPDQQQQ 300 HHNHHHHFN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 160 | 168 | RRARWKTKQ |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed predominantly in flowers, and in the cortex of the root and the stem. {ECO:0000269|PubMed:16055682}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00135548001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK229364 | 0.0 | AK229364.1 Arabidopsis thaliana mRNA for homeobox protein, complete cds, clone: RAFL16-61-C06. | |||
GenBank | BT044059 | 0.0 | BT044059.1 Arabidopsis thaliana unknown protein (At5g15150) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009121604.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HAT7-like | ||||
Swissprot | Q00466 | 0.0 | HAT7_ARATH; Homeobox-leucine zipper protein HAT7 | ||||
TrEMBL | A0A397XU22 | 0.0 | A0A397XU22_BRACM; Uncharacterized protein | ||||
STRING | Bo9g165360.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3095 | 26 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15150.1 | 1e-154 | homeobox 3 |
Publications ? help Back to Top | |||
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