PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00135487001 | ||||||||
Common Name | GSBRNA2T00135487001, LOC106372182 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | CO-like | ||||||||
Protein Properties | Length: 338aa MW: 37938.5 Da PI: 7.0092 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 21.2 | 6.2e-07 | 10 | 52 | 4 | 40 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 ++C+++ + + +C+ ++ +lC +C ++H H++v GSBRNA2T00135487001 10 QTCDTCRSAACTVYCRADSAYLCTSCDAQIHAAnrlasrHERV 52 69******99*********************656788888876 PP | |||||||
2 | zf-B_box | 35.7 | 1.8e-11 | 52 | 97 | 3 | 42 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 r+C+ +e+ ++ +fC+ + lC C +++H+ H++vp+ GSBRNA2T00135487001 52 VRVCQSCERAPAAFFCKADAASLCTACDSQIHSAnplarrHQRVPI 97 689*****************************66899999**9997 PP | |||||||
3 | CCT | 67.4 | 3.8e-23 | 267 | 311 | 1 | 45 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45 R+a+++RY+eK+ktRkFeK+irY+sRK++Ae+RpR+KGrF+k++e GSBRNA2T00135487001 267 RKARVMRYREKKKTRKFEKTIRYASRKEYAEKRPRIKGRFAKRNE 311 9*****************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 3.4E-9 | 7 | 54 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.779 | 7 | 54 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.10E-7 | 12 | 54 | No hit | No description |
PROSITE profile | PS50119 | 12.287 | 50 | 97 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 4.1E-9 | 52 | 97 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.22E-9 | 53 | 97 | No hit | No description |
SMART | SM00336 | 1.9E-12 | 55 | 97 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS51017 | 16.648 | 267 | 309 | IPR010402 | CCT domain |
Pfam | PF06203 | 2.3E-17 | 267 | 309 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0048576 | Biological Process | positive regulation of short-day photoperiodism, flowering | ||||
GO:0048579 | Biological Process | negative regulation of long-day photoperiodism, flowering | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0042802 | Molecular Function | identical protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 338 aa Download sequence Send to blast |
MLKQEGNWAQ TCDTCRSAAC TVYCRADSAY LCTSCDAQIH AANRLASRHE RVRVCQSCER 60 APAAFFCKAD AASLCTACDS QIHSANPLAR RHQRVPILPI SGSMVTNRSS ETTEAEDIVV 120 VGQEEEDEAE AASWLLPTSV KNCGDNNNNN NNSQDNRFSV GEEYLDLVDY SKYQQDYNVP 180 QRRSYVADGV VPLQVEVSKS LSHMHHEQHN FQFGFTNVSS EASPIHMVSL VPESTLSETT 240 VSHPRSPKAA MEELPEAPVQ MLSPMERKAR VMRYREKKKT RKFEKTIRYA SRKEYAEKRP 300 RIKGRFAKRN EVDAEEADKA FSSMVMFDTG YGIVPSF* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed throughout development. | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed in leaves and at lower levels in stems, flowers and siliques. Not detected in roots. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor that may be involved in the light input to the circadian clock but does not affect flowering time. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00135487001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Expressed with a circadian rhythm showing a peak at dawn. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY280868 | 0.0 | AY280868.2 Brassica napus putative beta-glucan elicitor receptor (Bger1), constans-like protein (CoL), and constans (Coa1) genes, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013667797.1 | 0.0 | zinc finger protein CONSTANS-LIKE 1 | ||||
Swissprot | O50055 | 1e-150 | COL1_ARATH; Zinc finger protein CONSTANS-LIKE 1 | ||||
TrEMBL | A0A397XNE2 | 0.0 | A0A397XNE2_BRACM; Uncharacterized protein | ||||
STRING | Bra008668.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2128 | 26 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15850.1 | 1e-131 | CONSTANS-like 1 |
Link Out ? help Back to Top | |
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Entrez Gene | 106372182 |
Publications ? help Back to Top | |||
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