PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00135411001
Common NameGSBRNA2T00135411001, LOC106371998
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 314aa    MW: 35621 Da    PI: 6.1896
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00135411001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.11.2e-141461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT+eEd++l++ +   G  +W++ ++  g+ R++k+c++rw +yl
  GSBRNA2T00135411001 14 KGPWTAEEDKKLINFILTNGHCCWRALPKLSGLLRCGKSCRLRWINYL 61
                         79******************************99************97 PP
2Myb_DNA-binding51.32.8e-1671111547
                          -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          ++ E++  +d+++qlG++ W++Ia++++ gRt++++k++w+++
  GSBRNA2T00135411001  71 SECEEQMVIDLHAQLGNR-WSKIASHLP-GRTDNEIKNHWNTH 111
                          5669**************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.6E-20563IPR009057Homeodomain-like
PROSITE profilePS5129412.661961IPR017930Myb domain
SuperFamilySSF466891.12E-2611108IPR009057Homeodomain-like
SMARTSM007172.5E-111363IPR001005SANT/Myb domain
PfamPF002496.5E-131461IPR001005SANT/Myb domain
CDDcd001673.33E-81661No hitNo description
PROSITE profilePS5129426.19562116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-2464116IPR009057Homeodomain-like
SMARTSM007173.6E-1466114IPR001005SANT/Myb domain
PfamPF002495.4E-1471111IPR001005SANT/Myb domain
CDDcd001678.48E-1174112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MGRQPCCDKV GLKKGPWTAE EDKKLINFIL TNGHCCWRAL PKLSGLLRCG KSCRLRWINY  60
LRPDLKRGLL SECEEQMVID LHAQLGNRWS KIASHLPGRT DNEIKNHWNT HIKKKLRKMG  120
IDPMTHKPLP EQDGSQQAQG SKSLVPHDDK NKKQDQEDKQ TKEKQEHHQL GIDLDKSNKT  180
ISTDDGFCID EVPLLDPHEI LLDISFADHH TSDENAHINI SNSTSPSSSS TSSCISSVPG  240
EEFSKFLDEM DTIDLKWLSS DHSSEDNIIY KDDKFHNNVD TMNLWDINYL SSLELFMNDH  300
DDGFVGSGCS RMV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-27121165108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in chalaza of mature seeds, cotyledons, rosette leaves, cauline leaves, veins of stems, mature siliques, sepals and styles. Expressed at low levels in roots. {ECO:0000269|PubMed:23660402}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as positive regulator of abscisic acid (ABA) signaling in response to salt stress. Acts as negative regulator ABI1, ABI2 and PP2CA, which are protein phosphatases 2C acting as negative regulator of ABA signaling. Binds to the DNA specific sequence and core element 5'-ACGT-3' found in the promoters of ABI1 and PP2CA to negatively regulate their expression during ABA-dependent salt stress response. {ECO:0000269|PubMed:23660402}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00135411001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress, drought stress and abscisic acid (ABA). Down-regulated by salicylic acid (SA) methyl jasmonate (JA). {ECO:0000269|PubMed:23660402}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF9747520.0KF974752.1 Brassica napus MYB transcription factor 43-2 (MYB43-2.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013667576.10.0protein ODORANT1
SwissprotQ9C7U72e-87MYB20_ARATH; Transcription factor MYB20
TrEMBLA0A397XN860.0A0A397XN86_BRACM; Uncharacterized protein
STRINGBo9g163020.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16600.11e-142myb domain protein 43
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]