PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00135275001
Common NameGSBRNA2T00135275001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family RAV
Protein Properties Length: 344aa    MW: 38323.3 Da    PI: 10.0781
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00135275001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.66.1e-1364112155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s+ykGV   + +grW A+I++      ++r++lg+f  +eeAa  ++ a++k++g
  GSBRNA2T00135275001  64 SKYKGVVPQP-NGRWGAQIYVK-----HQRVWLGTFSDEEEAAHSYDIAARKFRG 112
                          89****9888.8*********3.....5*************************98 PP
2B3107.56.3e-34183284198
                          EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                          f+kv tpsdv+k++rlv+pk++ae+h    +++ ++++ + +ed +g++W+++++y+++s++yvltkGW++Fvk+++L++gD+v+F+++ 
  GSBRNA2T00135275001 183 FEKVVTPSDVGKLNRLVIPKQHAEKHfplpSLSVTKGVLINFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVTFERST 272
                          99****************************888899***************************************************987 PP

                          SSEE..EEEEE- CS
                   B3  87 rsefelvvkvfr 98 
                           s+++l++ + r
  GSBRNA2T00135275001 273 GSDRQLYIDWKR 284
                          799999998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.04E-2464119No hitNo description
SuperFamilySSF541714.77E-1764120IPR016177DNA-binding domain
PfamPF008475.0E-664112IPR001471AP2/ERF domain
PROSITE profilePS5103219.96865120IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.9E-2065120IPR001471AP2/ERF domain
SMARTSM003809.2E-2865126IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.103.1E-41176287IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.55E-33180284IPR015300DNA-binding pseudobarrel domain
CDDcd100176.47E-30182280No hitNo description
PROSITE profilePS5086315.058183286IPR003340B3 DNA binding domain
SMARTSM010197.5E-28183286IPR003340B3 DNA binding domain
PfamPF023625.7E-31183284IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MVFSCIDESS STSESFSPAT TTAAKFSAPP LPPLRLNRMG SGGSNVVLDS KNGVDIDSRK  60
LSSSKYKGVV PQPNGRWGAQ IYVKHQRVWL GTFSDEEEAA HSYDIAARKF RGRDAVVNFK  120
TFLASEDDNG ELCFLEAHSK AEIVDMLRKH TYADELAQSN KRNGANTNTI QSDTVSRTRE  180
VLFEKVVTPS DVGKLNRLVI PKQHAEKHFP LPSLSVTKGV LINFEDVTGK VWRFRYSYWN  240
SSQSYVLTKG WSRFVKEKNL RAGDVVTFER STGSDRQLYI DWKRSGPSKN PVQVVVRLFG  300
VDIFNVTSTK PSNVVDACGG KRSRDVDMFA LRCSKKHAII NTL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A5e-6018028611119DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Transcriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences (Probable). Functionally redundant with TEM1. {ECO:0000250, ECO:0000269|PubMed:18718758, ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00025PBMTransfer from AT1G68840Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00135275001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0116651e-128AC011665.8 Arabidopsis thaliana chromosome 1 BAC T6L1 genomic sequence, complete sequence.
GenBankAC0119141e-128AC011914.9 Arabidopsis thaliana chromosome 1 BAC F14K14 genomic sequence, complete sequence.
GenBankAF3603121e-128AF360312.1 Arabidopsis thaliana putative DNA-binding protein(RAV2 (At1g68840) mRNA, complete cds.
GenBankAY0563611e-128AY056361.1 Arabidopsis thaliana putative DNA-binding protein RAV2 (At1g68840) mRNA, complete cds.
GenBankAY0859081e-128AY085908.1 Arabidopsis thaliana clone 19561 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013619115.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription repressor RAV2
SwissprotP822800.0RAV2_ARATH; AP2/ERF and B3 domain-containing transcription repressor RAV2
TrEMBLA0A0D3AP310.0A0A0D3AP31_BRAOL; Uncharacterized protein
STRINGBo2g061320.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM84827121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.20.0related to ABI3/VP1 2
Publications ? help Back to Top
  1. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Marín-González E, et al.
    SHORT VEGETATIVE PHASE Up-Regulates TEMPRANILLO2 Floral Repressor at Low Ambient Temperatures.
    Plant Physiol., 2015. 169(2): p. 1214-24
    [PMID:26243615]
  4. Sun YW, et al.
    Attenuation of Histone Methyltransferase KRYPTONITE-mediated transcriptional gene silencing by Geminivirus.
    Sci Rep, 2015. 5: p. 16476
    [PMID:26602265]
  5. Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD
    AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering.
    Plant Sci., 2015. 241: p. 78-95
    [PMID:26706061]
  6. Matías-Hernández L, et al.
    TEMPRANILLO Reveals the Mesophyll as Crucial for Epidermal Trichome Formation.
    Plant Physiol., 2016. 170(3): p. 1624-39
    [PMID:26802039]
  7. Li P, et al.
    The Arabidopsis UGT87A2, a stress-inducible family 1 glycosyltransferase, is involved in the plant adaptation to abiotic stresses.
    Physiol Plant, 2017. 159(4): p. 416-432
    [PMID:27747895]