PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00135251001

Common Name

GSBRNA2T00135251001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

TCP

Protein Properties

Length: 339aa MW: 38278.9 Da PI: 8.6054

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00135251001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	137	1.6e-42	104	227	3	133
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaak 92 +k+drhski+T+ g+RdRR+Rls+++a++fFdLqd+LGfdk+sktieWL+ ++k++ik+ ++ + +as ++++ ++s ++ + GSBRNA2T00135251001 104 KKRDRHSKICTAHGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLISKSKASIKQVKESAAAAAS---GNHEHLQVS-----DNVN 185 699**********************************************************777772...233333333.....2222 PP TCP 93 saa.kskksqksaasalnlakesrakarararertrekmrik 133 +++ k +k +++ + ++kesr+kar+rarert km+++ GSBRNA2T00135251001 186 DKTqKVSKGRTKRVDDSCKKKESREKARERARERTMTKMKMR 227 222244444444444467888*****************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.3E-34	104	176	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	34.922	105	163	IPR017887	Transcription factor TCP subgroup
PROSITE profile	PS51370	11.195	206	223	IPR017888	CYC/TB1, R domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:2000032	Biological Process	regulation of secondary shoot formation
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence Send to blast
MFPSIDTNGH DLFDPFNLHE ATMFPSFTTH ILSPSSHHHY PFPSFPSSSD FLDESVLISQ 60 FLLQQQANVD SPRKLCKELE QEKKNEEWVD GTTSEKVSPR RTGKKRDRHS KICTAHGPRD 120 RRMRLSLQIA RKFFDLQDML GFDKASKTIE WLISKSKASI KQVKESAAAA ASGNHEHLQV 180 SDNVNDKTQK VSKGRTKRVD DSCKKKESRE KARERARERT MTKMKMRLSG PIDTSKTFAD 240 PNQESRKTKI TGGAQVEGEN LEQERSIIEK FLGLTSESSS STIFGDSEES YTSLGSIRET 300 VSTGGMVIPR EHNTTLTASV DEERNPISTF SLYDYLCY*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Detected in axillary mersitems which appears in the axils of leaves after flowering. During bud vegetative development, down-regulated in the outer layers of the meristem, but accumulates transiently in young leaf primordia. In buds bearing flowers, restricted to the provascular tissue underlying the bud. Accumulates in axillary buds, but disappears at the time of bud outgrowth. {ECO:0000269\|PubMed:17307924}.
Uniprot	TISSUE SPECIFICITY: Expressed in axillary buds, and, to a lower extent, in axillary structures such as flowers and siliques. {ECO:0000269\|PubMed:17307924}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that prevents axillary bud outgrowth. May also delay early axillary bud development. Probably involved in the auxin-induced control of apical dominance. {ECO:0000269\|PubMed:17307924}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00135251001

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed transiently after shoot apical meristem (SAM) decapitation (release from apical dominance). {ECO:0000269\|PubMed:17307924}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013651399.1	0.0	transcription factor TCP12-like
Swissprot	A0AQW4	1e-134	TCP12_ARATH; Transcription factor TCP12
TrEMBL	A0A0D3AP24	0.0	A0A0D3AP24_BRAOL; Uncharacterized protein
STRING	Bo2g061250.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11632	25	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68800.1	1e-125	TCP domain protein 12

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]