PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00135128001

Common Name

GSBRNA2T00135128001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 201aa MW: 22777.7 Da PI: 7.0072

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00135128001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	23	1.4e-07	88	130	8	55
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +E++RR+ i+++ + L+el P++ K + a+ Le veYIksL+ GSBRNA2T00135128001 88 MEKKRRQLIRDKVDILQELTPNC-----AKSDLATKLESIVEYIKSLK 130 8*******************8.....69999999********95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	1.6E-10	79	141	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	12.341	80	129	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.8E-12	84	150	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.18E-7	85	133	No hit	No description
SMART	SM00353	7.2E-6	86	135	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.0E-5	88	129	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
MEINNNSGTH DEELYSLSEI ISSLSSEHHN ELNPLQEIFG AHSSSSTLSF SEPKDVTKTS 60 NQGDKRSHCN KNNHAGKRQR SMEYRVLMEK KRRQLIRDKV DILQELTPNC AKSDLATKLE 120 SIVEYIKSLK HQIDMMSKAY TEPAGYMAPL YGAQAPCMSP YTSPWCYYAP GIPMMPHQNI 180 PFNPQFHQVY ETAPPNQTQI *

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed during somatic embryogenesis. {ECO:0000269\|PubMed:26973252}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in somatic embryogenesis. Acts as positive regulator of somatic embryo formation (PubMed:23874927, PubMed:26973252). Acts as positive regulator of ECP63 by targeting its promoter and inducing its expression (PubMed:26973252). {ECO:0000269\|PubMed:23874927, ECO:0000269\|PubMed:26973252}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00135128001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013716094.1	1e-149	transcription factor bHLH109 isoform X2
Swissprot	Q5XVH0	4e-68	BH109_ARATH; Transcription factor bHLH109
TrEMBL	A0A078FKL2	1e-147	A0A078FKL2_BRANA; BnaA02g13710D protein
TrEMBL	A0A398AGE8	1e-147	A0A398AGE8_BRACM; Uncharacterized protein
STRING	Bo2g057720.1	1e-146	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15032	14	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68240.1	3e-57	bHLH family protein

Publications ? help Back to Top
Gliwicka M,Nowak K,Balazadeh S,Mueller-Roeber B,Gaj MD Extensive modulation of the transcription factor transcriptome during somatic embryogenesis in Arabidopsis thaliana. PLoS ONE, 2013. 8(7): p. e69261 [PMID:23874927] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Nowak K,Gaj MD Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis. J. Plant Physiol., 2016. 193: p. 119-26 [PMID:26973252]