PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00135049001
Common NameGSBRNA2T00135049001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 347aa    MW: 38494.2 Da    PI: 5.2183
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00135049001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH331.1e-10264312255
                          HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          r++  +  ++RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  GSBRNA2T00135049001 264 RKTDLMTVQKRRERINERLKILQNLVPNG-----TKVDISTMLEEAVQYVKFLQ 312
                          666667779******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.4E-12261321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.14E-10261316No hitNo description
PROSITE profilePS5088814.596262311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.32E-13263327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.3E-8264312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-8268317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MEAMGEWSTG LGGMYTDEAD FMNQLLASYD QPCGVSSPET TAPAAAYHPE KAHLTGGFCF  60
SQESSSYSAG HSGYYAVMPP REENNNGMED VTINTNLYLV GEEMCECEVA EYSAKSLLPL  120
ETVEENQDDN KRSLETEDDQ KLFNACESSK KRSRAITTDK NKRASKTRKT KKIMEMSDDN  180
NNCGGEVQTE KAGGKRNTKA LKIQKTCYSD DEANGGDTSS CKEGGEDCKA LNLNGKTRAS  240
RGAATDPQSL YARKISYVRL KTKRKTDLMT VQKRRERINE RLKILQNLVP NGTKVDISTM  300
LEEAVQYVKF LQLQIKLLSS DDLWMYAPIA YNGMDIGLDM KLNSLI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00135049001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5775843e-74AJ577584.1 Arabidopsis thaliana mRNA for putative bHLH084 transcription factor (bHLH084 gene).
GenBankDQ4464973e-74DQ446497.1 Arabidopsis thaliana clone pENTR221-At2g14760 basic helix-loop-helix protein/bHLH protein (At2g14760) mRNA, complete cds.
GenBankDQ6529853e-74DQ652985.1 Arabidopsis thaliana clone 0000009730_0000007191 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013705994.10.0transcription factor bHLH84-like isoform X1
SwissprotQ7XHI91e-170BH084_ARATH; Transcription factor bHLH84
TrEMBLA0A0D3E2W10.0A0A0D3E2W1_BRAOL; Uncharacterized protein
STRINGBo9g022600.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28342663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.31e-171bHLH family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]