PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00134894001
Common NameGSBRNA2T00134894001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Nin-like
Protein Properties Length: 270aa    MW: 31225.3 Da    PI: 5.6662
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00134894001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK72.74.7e-23144190652
               RWP-RK   6 sledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                          s ed++ yF++ i++AAkeLgv+lT+LKr+CR++G +RWPhRk++s+
  GSBRNA2T00134894001 144 SREDMKPYFKMLITKAAKELGVGLTLLKRRCRELGFSRWPHRKLTSI 190
                          789*****************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.279126210IPR003035RWP-RK domain
PfamPF020422.2E-19144190IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MVDHEHLWSW SESNDYESSF LQEENLFSLL DQSLSFDYNS FVNPFNGLQN ETWFSLQDSI  60
NLDPISTCFP AVDHMSMASV DFEAFSTLSQ ADVFGELWNE NACNFNNHVE PDMEIILHDG  120
NNTTKETTMQ KRRYRGDRLI QIFSREDMKP YFKMLITKAA KELGVGLTLL KRRCRELGFS  180
RWPHRKLTSI DGLINNLKDH LGKMEGEVNK SKLMNALEIL EAEKKMIEEF PDLEFGDKTK  240
RLRQACFKAN YKRRRLVSSS SMSTTSSIS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1251255KRRRL
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00134894001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022564964.10.0protein RKD3-like
SwissprotQ9FGD11e-94RKD3_ARATH; Protein RKD3
TrEMBLA0A3P6DQ650.0A0A3P6DQ65_BRAOL; Uncharacterized protein
STRINGBra037130.1-P1e-165(Brassica rapa)
STRINGBo9g020450.11e-170(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM121801932
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66990.11e-89RWP-RK domain-containing protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Tedeschi F,Rizzo P,Rutten T,Altschmied L,Bäumlein H
    RWP-RK domain-containing transcription factors control cell differentiation during female gametophyte development in Arabidopsis.
    New Phytol., 2017. 213(4): p. 1909-1924
    [PMID:27870062]