PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSBRNA2T00134881001 | ||||||||
Common Name | GSBRNA2T00134881001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 156aa MW: 17510.7 Da PI: 9.4005 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58 | 2.3e-18 | 21 | 70 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ykG+r +k +g+WvAeIr+p +kr+r +lg++ t+e Aa+a++ a +l+g GSBRNA2T00134881001 21 PYKGIRMRK-WGKWVAEIREP---NKRTRLWLGSYSTPEAAARAYDTAVFYLRG 70 59*****99.**********9...337*************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 22.774 | 21 | 78 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.0E-30 | 21 | 79 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.9E-37 | 21 | 84 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.0E-9 | 22 | 33 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.64E-27 | 22 | 79 | No hit | No description |
Pfam | PF00847 | 2.6E-12 | 22 | 70 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.31E-21 | 22 | 78 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 5.0E-9 | 44 | 60 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 156 aa Download sequence Send to blast |
MDGGGVADVA VAMTTRKRER PYKGIRMRKW GKWVAEIREP NKRTRLWLGS YSTPEAAARA 60 YDTAVFYLRG PTARLNFPEF LTGEKFSEED MSGDTIRKKA TEVGAQVDAL GTAVLNSRHR 120 VFDDKSLKSG GWLLERVDLN KVPDPENSDD DWESK* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 6e-15 | 22 | 78 | 6 | 63 | ATERF1 |
3gcc_A | 6e-15 | 22 | 78 | 6 | 63 | ATERF1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Bna.3987 | 0.0 | seed |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GSBRNA2T00134881001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK352993 | 1e-140 | AK352993.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-09-J19. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013611426.1 | 1e-105 | PREDICTED: ethylene-responsive transcription factor ERF010-like | ||||
Refseq | XP_013661347.2 | 1e-105 | ethylene-responsive transcription factor ERF010 | ||||
Swissprot | Q9FH94 | 2e-85 | ERF10_ARATH; Ethylene-responsive transcription factor ERF010 | ||||
TrEMBL | A0A078G045 | 1e-106 | A0A078G045_BRANA; BnaA09g07540D protein | ||||
STRING | Bo9g020380.1 | 1e-104 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G67190.1 | 7e-88 | DREB and EAR motif protein 2 |
Publications ? help Back to Top | |||
---|---|---|---|
|