PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00134844001

Common Name

GSBRNA2T00134844001, LOC106413704

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

LBD

Protein Properties

Length: 237aa MW: 25632.9 Da PI: 8.5964

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00134844001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	101.1	1e-31	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 +C++C+vlr++C+++C+l+p++ +++q +++ +v+k+FG++ ++++++a+pe++r+++++sl+yeA+ r+ +Pv+Ga+g+++++++ GSBRNA2T00134844001 2 SCNGCRVLRKGCSENCILRPCIqwiesADAQGHATVFVAKFFGRAGLMSFISAVPESQRPALFQSLLYEACGRTVNPVNGAIGMLWTGNW 91 6*******************9998666778****************************************************** PP DUF260 86 qleqlkaelall 97 +++q+++e++l+ GSBRNA2T00134844001 92 RICQAAVETVLR 103 ****999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	20.572	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.6E-26	2	101	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MSCNGCRVLR KGCSENCILR PCIQWIESAD AQGHATVFVA KFFGRAGLMS FISAVPESQR 60 PALFQSLLYE ACGRTVNPVN GAIGMLWTGN WRICQAAVET VLRGGSLRPI PELITHGGGF 120 PSATSEEASE ICAEMLKLQQ NDGSSDRNIY NHSRFSSSRS RSTLDSSPRK RKLDISLNPS 180 LPMKAVPSST RHQSRTPSMN SEESMTTTTT FWDNSASGAQ HGNGGGETSR LLNLFV*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	167	172	PRKRKL

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.11459	0.0	leaf\| root

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269\|PubMed:12068116}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00134844001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189526	0.0	AC189526.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB092J12, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013709904.1	1e-176	LOB domain-containing protein 37
Swissprot	Q9FN11	1e-121	LBD37_ARATH; LOB domain-containing protein 37
TrEMBL	A0A0D3CKP7	1e-174	A0A0D3CKP7_BRAOL; Uncharacterized protein
STRING	Bo5g132850.1	1e-174	(Brassica oleracea)
STRING	Bo9g019150.1	1e-174	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM821	28	122

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67420.1	1e-121	LOB domain-containing protein 37

Link Out ? help Back to Top
Entrez Gene	106413704

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465]