PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00134763001 | ||||||||
Common Name | GSBRNA2T00134763001, LOC106414555 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | LBD | ||||||||
Protein Properties | Length: 239aa MW: 26041.6 Da PI: 7.247 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 93.7 | 2e-29 | 2 | 103 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 +C++C+vlr +C++ C+l+p++ +++q +++ +v+k+FG++ +++l++a+pe +r+++++sl++eA+ r+ +Pv+Gavg+++++++ GSBRNA2T00134763001 2 SCNGCRVLRIGCSETCILRPCLqwiesAESQGHATVFVAKFFGRASLMSLISAAPEPNRPALFQSLLFEACGRTVNPVNGAVGMLWTVNW 91 6*********************9999777889********************************************************** PP DUF260 86 qleqlkaelall 97 +++q+++e++l+ GSBRNA2T00134763001 92 HVCQAAVETVLR 103 ******998876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 18.844 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.2E-24 | 2 | 101 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MSCNGCRVLR IGCSETCILR PCLQWIESAE SQGHATVFVA KFFGRASLMS LISAAPEPNR 60 PALFQSLLFE ACGRTVNPVN GAVGMLWTVN WHVCQAAVET VLRGGTLRPI SDLPESPSLN 120 SSDESTEIWR MQRRDGFSTS GSKLSTTGMK ESLVNRTRSK TEWSEQDMEL QLNPGLALTG 180 PVVPVPFLPP PQFSKAVNSD HPGSPSEESV TATSCYENGI SGDGYRNKRE RKLFNLFV* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00134763001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB473874 | 1e-125 | AB473874.1 Arabidopsis thaliana ASL41 mRNA for ASYMMETRIC LEAVES2-like 41 protein, complete cds. | |||
GenBank | AY072144 | 1e-125 | AY072144.1 Arabidopsis thaliana unknown protein (At4g37540) mRNA, complete cds. | |||
GenBank | AY122976 | 1e-125 | AY122976.1 Arabidopsis thaliana unknown protein (At4g37540) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013710644.1 | 1e-176 | LOB domain-containing protein 39 | ||||
Swissprot | Q9SZE8 | 1e-118 | LBD39_ARATH; LOB domain-containing protein 39 | ||||
TrEMBL | A0A0D3E299 | 1e-161 | A0A0D3E299_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6DMP7 | 1e-161 | A0A3P6DMP7_BRAOL; Uncharacterized protein | ||||
STRING | Bo9g018500.1 | 1e-162 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM821 | 28 | 122 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37540.1 | 1e-111 | LOB domain-containing protein 39 |
Link Out ? help Back to Top | |
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Entrez Gene | 106414555 |
Publications ? help Back to Top | |||
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