PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00134683001
Common NameGSBRNA2T00134683001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family CAMTA
Protein Properties Length: 988aa    MW: 110226 Da    PI: 6.0961
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00134683001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-11894.5e-59191362118
                 CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahsee 90 
                          l+e ++rwl++ ei++iL n++k+++++e+++rp+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+hekLKvg+++vl+cyYah+e+
  GSBRNA2T00134683001  19 LSEaQHRWLRPAEICEILRNYQKFHIASEPPNRPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSIDVLHCYYAHGED 108
                          45559************************************************************************************* PP

                 CG-1  91 nptfqrrcywlLeeelekivlvhylevk 118
                          n++fqrrcyw+Le+el +iv+vhylevk
  GSBRNA2T00134683001 109 NENFQRRCYWMLEQELMHIVFVHYLEVK 136
                          *************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143786.82615141IPR005559CG-1 DNA-binding domain
SMARTSM010768.0E-8718136IPR005559CG-1 DNA-binding domain
PfamPF038595.5E-5221135IPR005559CG-1 DNA-binding domain
SuperFamilySSF812963.29E-12402486IPR014756Immunoglobulin E-set
SuperFamilySSF484031.35E-19581694IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.2E-18583695IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029720.208583665IPR020683Ankyrin repeat-containing domain
PfamPF127962.9E-8584659IPR020683Ankyrin repeat-containing domain
CDDcd002042.44E-16589692No hitNo description
PROSITE profilePS500889.458600632IPR002110Ankyrin repeat
SMARTSM002481000600629IPR002110Ankyrin repeat
PROSITE profilePS5008811.22633665IPR002110Ankyrin repeat
SMARTSM002480.0016633662IPR002110Ankyrin repeat
SMARTSM000150.32802824IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525409.03E-8803852IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS500967.858804832IPR000048IQ motif, EF-hand binding site
PfamPF006120.0019804823IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0092825847IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.304826850IPR000048IQ motif, EF-hand binding site
PfamPF006124.3E-4828847IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071275Biological Processcellular response to aluminum ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 988 aa     Download sequence    Send to blast
MADRGSFGFA PQLDIQQLLS EAQHRWLRPA EICEILRNYQ KFHIASEPPN RPPSGSLFLF  60
DRKVLRYFRK DGHNWRKKKD GKTVKEAHEK LKVGSIDVLH CYYAHGEDNE NFQRRCYWML  120
EQELMHIVFV HYLEVKGNRI SSSGIKETNS NSLTGSTSVN IDSTANTSST LSPLCEDADS  180
GNRDGWIHGN RVKESDSQRL VGVPALDASF ENPLARYQNL PYNPLLTQTN PSNAGLMSVE  240
GHLRNPLQNQ VNWQIPVQDS LPLQKWPMDS HGTDLALHEN FGTFSSLIGS QNQQQQPIGG  300
SSFQAPFTSV EAAYIPKFGP EDLLYEASAN QTLPLRKSLL KKEDSLKKVD SFSRWVSNEL  360
AEMEDLQMQS SSGGIGWTSV ETAAAASSLS PSLSKDQRFT MIDFWPKWTQ TDTAVEVMVI  420
GTFLLSPEEV TSYSWACMFG EVEVPAEILV DGVLCCHAPP HEVGQVPFYI TCSDRFSCSE  480
VREFDFLPGS ARKLNTADIY GAYTNEASLH VRFENLLARV SSAQEHNVFE DVGEKRRKIS  540
RIMLLKDEKE SFLTSTVEKD LTAVEAKERL VREEFEDKLY LWLIHKVTEE GKGPNILDED  600
GQGVLHLAAA LGYDWAIKPI LAAGVSINFR DANGWSALHW AAFSGREDTV ALLVSLGADS  660
GAVTDPSPEL PLGKTASDLA YGNGHRGISG FLAESSLTSY LEKLTVDGKE DSSTDSSRAK  720
AVQTVAERTA TPMSYGDDSL TAVLNATQAA DRLHQVFRMQ SFQRKQLSEI GDKNEFGLSD  780
ELAVSFAAGK SKKAGGHSSG AAVHAAAVQI QKKYRGWKKR KEFLLIRQRI VKIQAHVRGH  840
QVRKQYRAII WSVGLLEKII LRWRRKGSGL RGFKRDAVTK APEPVCAAPA QEDDYDFLKE  900
GRKQTEERLQ KALTRVKSMA QYPEARAQYR RLLTVVEGIR ENEASSSSAM NNNNNNTEEA  960
ANYNEEDDLI DIDSLLDDDT FMSLAFE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.211390.0leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, old leaves, petals, sepals, top of carpels, stigmas, stamen filaments, anthers and siliques, but not in pollen. {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:14581622}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25627216, ECO:0000305|PubMed:11925432}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00043PBMTransfer from AT5G64220Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00134683001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt, wounding, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by aluminum (PubMed:25627216). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:25627216}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013652783.10.0calmodulin-binding transcription activator 2-like
SwissprotQ6NPP40.0CMTA2_ARATH; Calmodulin-binding transcription activator 2
TrEMBLA0A0D3E2500.0A0A0D3E250_BRAOL; Uncharacterized protein
STRINGBo9g018010.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40822452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.20.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]