PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00134540001 | ||||||||
Common Name | GSBRNA2T00134540001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | TCP | ||||||||
Protein Properties | Length: 181aa MW: 18821.1 Da PI: 11.0722 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 130.1 | 2.1e-40 | 27 | 141 | 2 | 110 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg... 88 a+kk + +++hTkv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ ++s s s+ + GSBRNA2T00134540001 27 AVKKPPAKDRHTKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFS-TASLSTSSPFA--Lgkr 113 79*******************************************************************777.22333332221..0224 PP TCP 89 .....kaaksaa.kskksqksaasalnl 110 + ++++ ++++q++a++a ++ GSBRNA2T00134540001 114 gvragEGEAATLfVRQQQQQQASAAAAM 141 5666633333332333333333333333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 27.59 | 33 | 87 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 5.0E-33 | 33 | 128 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence Send to blast |
MTSNDGSGPN GVIAEHPSAV NKGTLNAVKK PPAKDRHTKV DGRGRRIRMP IICAARVFQL 60 TRELGHKSDG QTIEWLLRQA EPSIIAATGT GTTPASFSTA SLSTSSPFAL GKRGVRAGEG 120 EAATLFVRQQ QQQQASAAAA MGEASAARVG NYLPGHHLNL LASLSGGNTG SGRREEDNPR 180 * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00134540001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189332 | 1e-112 | AC189332.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB038E05, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013630257.1 | 2e-96 | PREDICTED: transcription factor TCP21-like | ||||
Swissprot | Q9FMX2 | 3e-65 | TCP7_ARATH; Transcription factor TCP7 | ||||
TrEMBL | A0A0D3B0A0 | 4e-95 | A0A0D3B0A0_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3N6QFI3 | 4e-95 | A0A3N6QFI3_BRACR; Uncharacterized protein | ||||
TrEMBL | A0A3P6AN88 | 4e-95 | A0A3P6AN88_BRAOL; Uncharacterized protein | ||||
STRING | Bo3g004850.1 | 7e-96 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1782 | 26 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08330.1 | 1e-42 | TCP family protein |
Publications ? help Back to Top | |||
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