PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00134477001
Common NameGSBRNA2T00134477001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ARR-B
Protein Properties Length: 567aa    MW: 64238.8 Da    PI: 5.2495
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00134477001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like70.91.9e-22184237155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          kp+++Wt  LH+ F++a++ L G +kA+Pk+ile m+++ Lt+e+++SHLQkYR+
  GSBRNA2T00134477001 184 KPKIKWTDGLHDLFLQAIRYL-GLDKAVPKKILEYMNLPYLTRENIASHLQKYRI 237
                          79*******************.********************************6 PP
2Response_reg54.37.6e-19119525109
                          EEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
         Response_reg  25 evaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                          +v +++d+ eal +lk+++  +Dli++D  mp+m+Gl+l k+i++e  ++p+iv+++ ++    +e l  Gak fl Kp+ p ++ +
  GSBRNA2T00134477001  11 SVIAVQDPIEALSTLKTQRhnIDLIVTDYYMPHMNGLQLKKQITREFGNIPVIVMSSDSN--IEHESLACGAKCFLPKPIRPTDIPQ 95 
                          566899999*****9777777**********************99999********7776..8899****************99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011027.2951101IPR001789Signal transduction response regulator, receiver domain
SMARTSM004480.0038197IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23008.1E-209107No hitNo description
CDDcd001561.52E-1710101No hitNo description
SuperFamilySSF521724.41E-1910110IPR011006CheY-like superfamily
PfamPF000723.9E-151196IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF466891.59E-17182241IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.1E-22183241IPR009057Homeodomain-like
TIGRFAMsTIGR015573.3E-24184237IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 567 aa     Download sequence    Send to blast
MVLDPSFKEI SVIAVQDPIE ALSTLKTQRH NIDLIVTDYY MPHMNGLQLK KQITREFGNI  60
PVIVMSSDSN IEHESLACGA KCFLPKPIRP TDIPQIYQVA LTYKRNDKSI LWTEPNYRDT  120
DVSIPQQIQL LAEQANVLKT NKRFSPISDS RPVNSSNGSY VGSGENRKRK SNGGSDDDSR  180
PLKKPKIKWT DGLHDLFLQA IRYLGLDKAV PKKILEYMNL PYLTRENIAS HLQKYRIFLR  240
KVAEQGFSCS RMLPTKGIDS IFLQAHLRDP YYNNYAPSSS LYDTTINNRS FYSKSEQGYG  300
QSRLLSNTAE PVRFNQMPYN YMNGNLSFPI QPSQNEGRRS LFEPTVMANK TVQTSQVMGF  360
GQHGLSAING TSFNNNMSTR SEKLLNIHES LTPNQPGPSN FSYGMQMFLN NENTTYKPQA  420
HDNATTQPNL EIPQLENLSL CDYLNNTDEL LCDISNLQID HNKQQEEAVS TNKFELPANF  480
ETELNQFFSL EENGDGNFVN INQGHSEGEP SNIVAAPETN YPVFNMNPNH EQEQGVPDFV  540
DWSSLDPKDF ANEYDFVDSL LTNDMN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A4e-19183243464ARR10-B
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mainly expressed in siliques. Also found in germinating seedlings, stems, flowers and roots, but not in rosette leaves. {ECO:0000269|PubMed:15173562, ECO:0000269|Ref.3}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00134477001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018475513.10.0PREDICTED: putative two-component response regulator ARR21 isoform X1
SwissprotQ9LYP50.0ARR21_ARATH; Putative two-component response regulator ARR21
TrEMBLV4KRT80.0V4KRT8_EUTSA; Uncharacterized protein
STRINGXP_006399202.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61131737
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07210.10.0response regulator 21
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]