PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00134448001 | ||||||||
Common Name | GSBRNA2T00134448001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 261aa MW: 29354.3 Da PI: 10.0185 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.5 | 4.7e-18 | 110 | 164 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +k+ +++k+q Le+ F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k GSBRNA2T00134448001 110 KKKLRLSKDQSAFLEDSFKEHNTLNPKQKIALAKQLNLRPRQVEVWFQNRRARTK 164 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 129.1 | 1.8e-41 | 110 | 200 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+rlsk+q+++LE+sF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+kev+eLr + GSBRNA2T00134448001 110 KKKLRLSKDQSAFLEDSFKEHNTLNPKQKIALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKKCCESLTDENRRLQKEVKELR-A 198 59*************************************************************************************9.5 PP HD-ZIP_I/II 91 lk 92 lk GSBRNA2T00134448001 199 LK 200 55 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 17.006 | 106 | 166 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.4E-16 | 108 | 170 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 5.13E-18 | 109 | 175 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 2.2E-15 | 110 | 164 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.88E-15 | 110 | 167 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-17 | 115 | 164 | IPR009057 | Homeodomain-like |
PROSITE pattern | PS00027 | 0 | 141 | 164 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 5.1E-26 | 166 | 209 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 7.4E-11 | 166 | 200 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MGLDVLGFGS QRSLSSSSSP SVEDEKKYKS KLTQRANYSD GVRVSSSVDP SLQLQLHLPW 60 IPENRAPTVA EPSMPVSPPD SVTSSFRLDF GIKSYGYEKR NNKRDMEDEK KKLRLSKDQS 120 AFLEDSFKEH NTLNPKQKIA LAKQLNLRPR QVEVWFQNRR ARTKLKQTEV DCEYLKKCCE 180 SLTDENRRLQ KEVKELRALK TSSPFYMQRP ATTLTMCPSC ERVATSSSQP STSAAHIDLS 240 TSSFHSPLIP VKPGPAKQVS * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 158 | 166 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00134448001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189367 | 1e-159 | AC189367.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB046M04, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009130954.1 | 1e-178 | PREDICTED: homeobox-leucine zipper protein HAT14-like | ||||
Swissprot | P46665 | 1e-126 | HAT14_ARATH; Homeobox-leucine zipper protein HAT14 | ||||
TrEMBL | A0A3P6ADL9 | 0.0 | A0A3P6ADL9_BRAOL; Uncharacterized protein | ||||
STRING | Bra005907.1-P | 1e-177 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4928 | 28 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06710.1 | 1e-117 | homeobox from Arabidopsis thaliana |
Publications ? help Back to Top | |||
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