PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSBRNA2T00134287001 | ||||||||
Common Name | GSBRNA2T00134287001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 219aa MW: 25087.3 Da PI: 9.4354 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.2 | 2.8e-18 | 78 | 131 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ ++t+ ql Le+ F+ + +++ +++ +L+++lgL+ rq+ vWFqNrRa++k GSBRNA2T00134287001 78 KKKRLTSGQLASLERSFQDEIKLDSARKLKLSRELGLQPRQIAVWFQNRRARWK 131 45679************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 115.2 | 3.9e-37 | 78 | 168 | 2 | 92 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 kk+rl++ q+++LE+sF+ e kL++ rK +l+reLglqprq+avWFqnrRAR+k+kqlE+ y++L+++yd +++e+++L++ev++Lr+ l GSBRNA2T00134287001 78 KKKRLTSGQLASLERSFQDEIKLDSARKLKLSRELGLQPRQIAVWFQNRRARWKAKQLEQLYDSLRQEYDVVSREKQMLHEEVKKLRAIL 167 9*****************999******************************************************************876 PP HD-ZIP_I/II 92 k 92 + GSBRNA2T00134287001 168 R 168 5 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 7.27E-18 | 66 | 135 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.471 | 73 | 133 | IPR001356 | Homeobox domain |
SMART | SM00389 | 7.3E-16 | 77 | 137 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.23E-14 | 78 | 134 | No hit | No description |
Pfam | PF00046 | 9.1E-16 | 78 | 131 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 6.6E-19 | 80 | 140 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 5.2E-5 | 104 | 113 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 108 | 131 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 5.2E-5 | 113 | 129 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 219 aa Download sequence Send to blast |
MEWSTTNNLE NMRVAFMPPT WPESSSFNSL HSFNYDPYAA GNSYTPADTQ TGPVISVPEP 60 DKIINAYRLP SNNNEITKKK RLTSGQLASL ERSFQDEIKL DSARKLKLSR ELGLQPRQIA 120 VWFQNRRARW KAKQLEQLYD SLRQEYDVVS REKQMLHEEV KKLRAILRDH GLIKKQISNV 180 TSGEDTTEIP SVVTTKVYGT DQYNNQMVVA SSCWPSYP* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 125 | 133 | RRARWKAKQ |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GSBRNA2T00134287001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC232522 | 0.0 | AC232522.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB073I16, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_022553844.1 | 1e-163 | putative homeobox-leucine zipper protein ATHB-51 | ||||
Swissprot | Q9LZR0 | 1e-127 | ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51 | ||||
TrEMBL | A0A3P5ZY03 | 1e-161 | A0A3P5ZY03_BRAOL; Uncharacterized protein | ||||
STRING | Bo3g002560.1 | 1e-154 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1660 | 28 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G03790.1 | 1e-130 | homeobox 51 |
Publications ? help Back to Top | |||
---|---|---|---|
|