PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00134180001 | ||||||||
Common Name | GSBRNA2T00134180001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | TALE | ||||||||
Protein Properties | Length: 533aa MW: 57115.1 Da PI: 7.3416 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 22.8 | 1.5e-07 | 327 | 357 | 24 | 54 |
S--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 24 ypsaeereeLAkklgLterqVkvWFqNrRak 54 yp+ +++ LAk++gL+ +qV++WF N R + GSBRNA2T00134180001 327 YPTDTDKLVLAKHTGLSRNQVSNWFINARVR 357 9****************************87 PP | |||||||
2 | BELL | 109.8 | 1.6e-35 | 222 | 290 | 4 | 72 |
BELL 4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 e+ kkk+kL+s+l+eV+krYkqy+eqlq+v++sFe+vaglg+a+pY+sl lka+S+hF+cLk+ai++q+ GSBRNA2T00134180001 222 EHGKKKSKLISMLDEVYKRYKQYYEQLQAVMGSFECVAGLGHAAPYASLTLKALSKHFKCLKTAITDQL 290 889***************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 7.3E-63 | 164 | 288 | IPR006563 | POX domain |
Pfam | PF07526 | 2.4E-34 | 169 | 287 | IPR006563 | POX domain |
SMART | SM00389 | 0.0043 | 260 | 365 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 10.446 | 327 | 361 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-14 | 327 | 365 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 8.84E-8 | 327 | 362 | No hit | No description |
Pfam | PF05920 | 6.8E-12 | 327 | 357 | IPR008422 | Homeobox KN domain |
SuperFamily | SSF46689 | 1.54E-10 | 327 | 368 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 533 aa Download sequence Send to blast |
MADAYEPYHI LQQSRRDKLR IPSLDSHFHF NHPPPPSSSG GGLFPFTDSD YLAAGGFHSN 60 NNSNHISNPS HSNFMGFLGG PSSSSSAAVT VAGDPSFNAE LSSGDVLVFR PEPLSLSLSS 120 HPRLAYDLVV PGVASFGFCR SASEAAAAAV TVASRSSGPL GPCTGYASIL KGSRFLKPAQ 180 MLLDEFCNVA LGVYTDKVMD DEDDSSLLFD PTVETLCGVS GEHGKKKSKL ISMLDEVYKR 240 YKQYYEQLQA VMGSFECVAG LGHAAPYASL TLKALSKHFK CLKTAITDQL QFSTNNKRQQ 300 QCGHVMDSDN KTDSLRFGGS DSGRGFYPTD TDKLVLAKHT GLSRNQVSNW FINARVRVWK 360 PMVEEIHMLE TRQSQRSSSS SWRDERSTAD FPDNNNDNPS SSSAQQRANN NSSPARRVRN 420 HDVHGPNSNN NNNFMNAGSG GSGGGAVSFS YGIASSNIPG ISSSTNGGVS LTLGLHHQIG 480 LSEPFPMTTA QRLGLDGGSS GGGGGGYDRQ NRQFGRDFIG GSNHQFLHDF VG* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed during late heart stage embryo in the SAM region between the two developing cotyledons. Expression is initially down-regulated in incipient floral primordia but a strong expression is subsequently detected in the central region of young floral primordia and the inner whorl of developing flowers. In fruit, is expressed in the replum of developing ovaries. {ECO:0000269|PubMed:12874117}. | |||||
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in stems, inflorescences and flowers. {ECO:0000269|PubMed:12874117, ECO:0000269|PubMed:12897247, ECO:0000269|PubMed:13678595, ECO:0000269|PubMed:15019989}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that is involved in the preservation of the spiral phyllotactic arrangement leading to a regular pattern of organ initiation. Required for maintenance of stem cell fate in the shoot apical meristem, and is essential for specifying floral primordia and establishing early internode patterning events during inflorescence development. Acts as transcription repressor of AG expression in floral and inflorescence meristems. Is also responsive of the nuclear import of SHOOT MERISTEMLESS (STM). In the fruit, plays a central role in patterning by negatively regulating SHP expression in order to prevent replum cells from adopting a valve margin cell fate. {ECO:0000269|PubMed:12874117, ECO:0000269|PubMed:12897247, ECO:0000269|PubMed:13678595, ECO:0000269|PubMed:15019989, ECO:0000269|PubMed:15120075, ECO:0000269|PubMed:15155890, ECO:0000269|PubMed:16741748}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00134180001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013623415.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 9 | ||||
Refseq | XP_013746256.1 | 0.0 | BEL1-like homeodomain protein 9 | ||||
Swissprot | Q9LZM8 | 0.0 | BLH9_ARATH; BEL1-like homeodomain protein 9 | ||||
TrEMBL | A0A0D3AZD4 | 0.0 | A0A0D3AZD4_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6AID7 | 0.0 | A0A3P6AID7_BRAOL; Uncharacterized protein | ||||
STRING | Bo3g001690.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5688 | 27 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G02030.1 | 0.0 | TALE family protein |