PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00134180001
Common NameGSBRNA2T00134180001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TALE
Protein Properties Length: 533aa    MW: 57115.1 Da    PI: 7.3416
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00134180001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.81.5e-073273572454
                          S--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  24 ypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          yp+ +++  LAk++gL+ +qV++WF N R +
  GSBRNA2T00134180001 327 YPTDTDKLVLAKHTGLSRNQVSNWFINARVR 357
                          9****************************87 PP

2BELL109.81.6e-35222290472
                 BELL   4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                          e+ kkk+kL+s+l+eV+krYkqy+eqlq+v++sFe+vaglg+a+pY+sl lka+S+hF+cLk+ai++q+
  GSBRNA2T00134180001 222 EHGKKKSKLISMLDEVYKRYKQYYEQLQAVMGSFECVAGLGHAAPYASLTLKALSKHFKCLKTAITDQL 290
                          889***************************************************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005747.3E-63164288IPR006563POX domain
PfamPF075262.4E-34169287IPR006563POX domain
SMARTSM003890.0043260365IPR001356Homeobox domain
PROSITE profilePS5007110.446327361IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.2E-14327365IPR009057Homeodomain-like
CDDcd000868.84E-8327362No hitNo description
PfamPF059206.8E-12327357IPR008422Homeobox KN domain
SuperFamilySSF466891.54E-10327368IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    Send to blast
MADAYEPYHI LQQSRRDKLR IPSLDSHFHF NHPPPPSSSG GGLFPFTDSD YLAAGGFHSN  60
NNSNHISNPS HSNFMGFLGG PSSSSSAAVT VAGDPSFNAE LSSGDVLVFR PEPLSLSLSS  120
HPRLAYDLVV PGVASFGFCR SASEAAAAAV TVASRSSGPL GPCTGYASIL KGSRFLKPAQ  180
MLLDEFCNVA LGVYTDKVMD DEDDSSLLFD PTVETLCGVS GEHGKKKSKL ISMLDEVYKR  240
YKQYYEQLQA VMGSFECVAG LGHAAPYASL TLKALSKHFK CLKTAITDQL QFSTNNKRQQ  300
QCGHVMDSDN KTDSLRFGGS DSGRGFYPTD TDKLVLAKHT GLSRNQVSNW FINARVRVWK  360
PMVEEIHMLE TRQSQRSSSS SWRDERSTAD FPDNNNDNPS SSSAQQRANN NSSPARRVRN  420
HDVHGPNSNN NNNFMNAGSG GSGGGAVSFS YGIASSNIPG ISSSTNGGVS LTLGLHHQIG  480
LSEPFPMTTA QRLGLDGGSS GGGGGGYDRQ NRQFGRDFIG GSNHQFLHDF VG*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during late heart stage embryo in the SAM region between the two developing cotyledons. Expression is initially down-regulated in incipient floral primordia but a strong expression is subsequently detected in the central region of young floral primordia and the inner whorl of developing flowers. In fruit, is expressed in the replum of developing ovaries. {ECO:0000269|PubMed:12874117}.
UniprotTISSUE SPECIFICITY: Predominantly expressed in stems, inflorescences and flowers. {ECO:0000269|PubMed:12874117, ECO:0000269|PubMed:12897247, ECO:0000269|PubMed:13678595, ECO:0000269|PubMed:15019989}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that is involved in the preservation of the spiral phyllotactic arrangement leading to a regular pattern of organ initiation. Required for maintenance of stem cell fate in the shoot apical meristem, and is essential for specifying floral primordia and establishing early internode patterning events during inflorescence development. Acts as transcription repressor of AG expression in floral and inflorescence meristems. Is also responsive of the nuclear import of SHOOT MERISTEMLESS (STM). In the fruit, plays a central role in patterning by negatively regulating SHP expression in order to prevent replum cells from adopting a valve margin cell fate. {ECO:0000269|PubMed:12874117, ECO:0000269|PubMed:12897247, ECO:0000269|PubMed:13678595, ECO:0000269|PubMed:15019989, ECO:0000269|PubMed:15120075, ECO:0000269|PubMed:15155890, ECO:0000269|PubMed:16741748}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00134180001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013623415.10.0PREDICTED: BEL1-like homeodomain protein 9
RefseqXP_013746256.10.0BEL1-like homeodomain protein 9
SwissprotQ9LZM80.0BLH9_ARATH; BEL1-like homeodomain protein 9
TrEMBLA0A0D3AZD40.0A0A0D3AZD4_BRAOL; Uncharacterized protein
TrEMBLA0A3P6AID70.0A0A3P6AID7_BRAOL; Uncharacterized protein
STRINGBo3g001690.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56882746
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02030.10.0TALE family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Pabón-Mora N,Wong GK,Ambrose BA
    Evolution of fruit development genes in flowering plants.
    Front Plant Sci, 2014. 5: p. 300
    [PMID:25018763]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  4. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]
  5. Andrés F, et al.
    Floral Induction in Arabidopsis by FLOWERING LOCUS T Requires Direct Repression of BLADE-ON-PETIOLE Genes by the Homeodomain Protein PENNYWISE.
    Plant Physiol., 2015. 169(3): p. 2187-99
    [PMID:26417007]
  6. Bencivenga S,Serrano-Mislata A,Bush M,Fox S,Sablowski R
    Control of Oriented Tissue Growth through Repression of Organ Boundary Genes Promotes Stem Morphogenesis.
    Dev. Cell, 2016. 39(2): p. 198-208
    [PMID:27666746]
  7. Sehra B,Franks RG
    Redundant CArG Box Cis-motif Activity Mediates SHATTERPROOF2 Transcriptional Regulation during Arabidopsis thaliana Gynoecium Development.
    Front Plant Sci, 2017. 8: p. 1712
    [PMID:29085379]
  8. Simonini S,Stephenson P,Østergaard L
    A molecular framework controlling style morphology in Brassicaceae.
    Development, 2018.
    [PMID:29440299]