PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00133643001

Common Name

GSBRNA2T00133643001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

CPP

Protein Properties

Length: 520aa MW: 57419.8 Da PI: 6.964

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00133643001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	44.6	2.9e-14	137	175	2	41
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 ++k+CnCk s+Clk+YCeCfa+g++C+ C+C +C+N+ e GSBRNA2T00133643001 137 KQKHCNCKASRCLKLYCECFASGSYCNG-CNCVNCQNNLE 175 79************************.******976 PP
2	TCR	51.9	1.5e-16	221	260	1	40
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 k++kgC+Ckks ClkkYCeC++a+++Cse+C+C+dCkN e GSBRNA2T00133643001 221 KHSKGCHCKKSGCLKKYCECYQANVFCSENCRCQDCKNFE 260 589***********************************65 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	5.4E-16	136	176	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	36.484	137	261	IPR005172	CRC domain
Pfam	PF03638	6.7E-11	138	173	IPR005172	CRC domain
SMART	SM01114	2.0E-19	221	262	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	1.0E-12	224	259	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 520 aa Download sequence Send to blast
MEKSDHDLSS HQNPLAHQLD FSVPAAAAAA AVETKMIDSS QETEKKLSQS PLEDQRDEDL 60 PSQPSGTEEQ HRLGVKSLEE PVRSWQPSAT EDATTTQKPP MHRLGHPLGK CRVSKQEPLT 120 PLGQRTEAES KDGTPNKQKH CNCKASRCLK LYCECFASGS YCNGCNCVNC QNNLENESAR 180 QEAITGTLER NPDAFKPKIA GSPHGINDLQ EDVRQLLILG KHSKGCHCKK SGCLKKYCEC 240 YQANVFCSEN CRCQDCKNFE GSEERSALLH GSHHVSETYI QQTTNAALSR AVSTSGFLNT 300 PESRKRKSKD ASSAVPHLVQ NQAVNRVIRN GDTSLFSIPN NKAVSGSPTC TYRSSLSNTI 360 QPRHVKDLCT LLVATSLDVA NKYSDKRRKH EKDPSLDPAQ RDANEINDSP DCVLDSTRMD 420 EKPLSPATRA LMCYDEHVIT SEKETSAGVK TSQEKEDADT SSEIYLEKER QILSSFRDFL 480 IQLSNRGSIK AGTNIKTNTN PSRKEPQDEE QSHRDSSLG*

Sequence ? help Back to Top

Protein Sequence Length: 520 aa Download sequence Send to blast

MEKSDHDLSS HQNPLAHQLD FSVPAAAAAA AVETKMIDSS QETEKKLSQS PLEDQRDEDL  60
PSQPSGTEEQ HRLGVKSLEE PVRSWQPSAT EDATTTQKPP MHRLGHPLGK CRVSKQEPLT  120
PLGQRTEAES KDGTPNKQKH CNCKASRCLK LYCECFASGS YCNGCNCVNC QNNLENESAR  180
QEAITGTLER NPDAFKPKIA GSPHGINDLQ EDVRQLLILG KHSKGCHCKK SGCLKKYCEC  240
YQANVFCSEN CRCQDCKNFE GSEERSALLH GSHHVSETYI QQTTNAALSR AVSTSGFLNT  300
PESRKRKSKD ASSAVPHLVQ NQAVNRVIRN GDTSLFSIPN NKAVSGSPTC TYRSSLSNTI  360
QPRHVKDLCT LLVATSLDVA NKYSDKRRKH EKDPSLDPAQ RDANEINDSP DCVLDSTRMD  420
EKPLSPATRA LMCYDEHVIT SEKETSAGVK TSQEKEDADT SSEIYLEKER QILSSFRDFL  480
IQLSNRGSIK AGTNIKTNTN PSRKEPQDEE QSHRDSSLG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	1e-32	123	270	1	132	Protein lin-54 homolog
5fd3_B	1e-32	123	270	1	132	Protein lin-54 homolog
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	302	307	SRKRKS

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a role in development of both male and female reproductive tissues. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00133643001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC172883	1e-109	AC172883.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH125N23, complete sequence.
GenBank	AC189321	1e-109	AC189321.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB036J07, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013644023.1	0.0	protein tesmin/TSO1-like CXC 7
Refseq	XP_013703572.1	0.0	protein tesmin/TSO1-like CXC 7
Refseq	XP_013706329.1	0.0	protein tesmin/TSO1-like CXC 7
Swissprot	F4JY84	0.0	TCX7_ARATH; Protein tesmin/TSO1-like CXC 7
TrEMBL	A0A3P5Z539	0.0	A0A3P5Z539_BRACM; Uncharacterized protein
STRING	Bra009859.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13463	16	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G25790.1	0.0	Tesmin/TSO1-like CXC domain-containing protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]