PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00133586001
Common NameGSBRNA2T00133586001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TALE
Protein Properties Length: 445aa    MW: 48907.8 Da    PI: 5.0141
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00133586001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.52e-073824142254
                          SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                           +yp++e++++L +++gL+ +q+ +WF N+R +
  GSBRNA2T00133586001 382 WPYPTEEDKARLVQETGLQLKQINNWFINQRKR 414
                          58*****************************87 PP
2ELK29.91.2e-10335356122
                  ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                          ELKh+L+++Y+++++++++E++
  GSBRNA2T00133586001 335 ELKHELKQGYKEKIVDIREEIM 356
                          9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012554.8E-19169213IPR005540KNOX1
PfamPF037904.4E-17172212IPR005540KNOX1
SMARTSM012569.9E-29226281IPR005541KNOX2
PfamPF037915.5E-21231280IPR005541KNOX2
PROSITE profilePS512139.969335355IPR005539ELK domain
PfamPF037894.1E-7335356IPR005539ELK domain
SMARTSM011881.8E-4335356IPR005539ELK domain
PROSITE profilePS5007111.677355418IPR001356Homeobox domain
SuperFamilySSF466898.13E-16357421IPR009057Homeodomain-like
SMARTSM003891.5E-10357422IPR001356Homeobox domain
CDDcd000862.19E-11358419No hitNo description
Gene3DG3DSA:1.10.10.601.4E-24362419IPR009057Homeodomain-like
PfamPF059201.3E-17375414IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MSAVSEGPAA EGCWTVWLEG EWGEDSVERT ETLVRLRRLE EVVGERMGNS SKERVGSGSG  60
GSGGMRFLLS PVEEDDGGEA EARRLKSHGF LCGLIIETYE TIVIRSRDSP SPPLSLSLSL  120
SLSLSNNNAA VVGDVIDDVT GGGAEQMMSG GENKNDGGGG EGVVSWQNAR HKSEILSHPL  180
YEQLLSAHVA CLRIATPVDQ LPRIDAQLAQ SQHVVAKYST LCGGGQGLVG GDDKELDQFM  240
THYVLLLCSF KEQLQQHVRV HAMEAVMACW EIEQSLQSLT GVSPGEGMGA TMSDDEDEQV  300
ESDANMFDGG LDVLGFGPLI PTESERSLME RVRQELKHEL KQGYKEKIVD IREEIMRKRR  360
AGKLPGDTTS VLKGWWQSHS KWPYPTEEDK ARLVQETGLQ LKQINNWFIN QRKRNWHSNP  420
SSSTVLKNKR KSNAGDNSGR ERFT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A1e-12358422872Homeobox protein PKNOX1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.230581e-155leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00133586001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3529660.0AK352966.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-12-H10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013598002.10.0PREDICTED: homeobox protein knotted-1-like 3
RefseqXP_013706486.10.0homeobox protein knotted-1-like 3 isoform X1
SwissprotP480000.0KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLA0A0D3DCW50.0A0A0D3DCW5_BRAOL; Uncharacterized protein
TrEMBLA0A3P6ESQ10.0A0A3P6ESQ1_BRAOL; Uncharacterized protein
STRINGBo7g096160.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44428158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.10.0KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]