PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00133089001 | ||||||||
Common Name | GSBRNA2T00133089001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ARF | ||||||||
Protein Properties | Length: 760aa MW: 83959.3 Da PI: 6.8229 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 75.4 | 6.6e-24 | 175 | 276 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+k+lt sd++++g +++p++ ae++ + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv+++ L +gD v+F GSBRNA2T00133089001 175 FCKTLTASDTSTHGGFSVPRRAAEDCfapldyK-QQRPSQELIAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVSQKSLVSGDAVLFL- 262 99****************************963.3445679************************************************. PP -SSSEE..EEEEE-S CS B3 85 dgrsefelvvkvfrk 99 +++++el+++++r+ GSBRNA2T00133089001 263 -RDENGELRLGIRRS 276 .5689999****986 PP | |||||||
2 | Auxin_resp | 120.5 | 1.2e-39 | 300 | 381 | 1 | 82 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +a+a+s+ks+F+v+Y+Pra++seFv+++ek+ +++k+++ +G+Rf+m+fe++ds+err++G+v+gv d+dp+rWpnSkWr+L GSBRNA2T00133089001 300 VANAVSNKSMFDVFYSPRATHSEFVIPYEKYITSIKNPIGIGTRFRMRFEMDDSPERRCAGVVTGVCDMDPYRWPNSKWRCL 381 689******************************************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.6E-40 | 166 | 287 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.32E-42 | 169 | 291 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.76E-21 | 173 | 275 | No hit | No description |
SMART | SM01019 | 3.7E-23 | 175 | 277 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.6E-22 | 175 | 276 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.422 | 175 | 277 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.7E-33 | 300 | 381 | IPR010525 | Auxin response factor |
SuperFamily | SSF54277 | 3.63E-10 | 635 | 713 | No hit | No description |
PROSITE profile | PS51745 | 22.181 | 638 | 720 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0010050 | Biological Process | vegetative phase change | ||||
GO:0010158 | Biological Process | abaxial cell fate specification | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 760 aa Download sequence Send to blast |
MEFDLNTEFA EVEEEENDEG GGARVEKGKR LGVLPSSSSS CSSRSSSSSS SSTTASASSI 60 YSELWHACAG PLTSLPKKGN VVVYFPQGHL EQGVMVSYSS PLDVPKLDLS PQIFCRVAAV 120 HLLANKETDE VYTQVTLLPL QELSMLNGEG KEVKELGGDE EKNGSSSVKK TPHMFCKTLT 180 ASDTSTHGGF SVPRRAAEDC FAPLDYKQQR PSQELIAKDL HGVEWKFRHI YRGQPRRHLL 240 TTGWSIFVSQ KSLVSGDAVL FLRDENGELR LGIRRSARPR NGLPDSIIQK YSSSSILSLV 300 ANAVSNKSMF DVFYSPRATH SEFVIPYEKY ITSIKNPIGI GTRFRMRFEM DDSPERRCAG 360 VVTGVCDMDP YRWPNSKWRC LLVRWDESFM SDHQERVSPW EIDPSGSLPP LSIQSSPRPK 420 RPWAGLLGTT TPQGNPITAE RGGFLDFEES VRPSKVLQGQ ENTGSASSSP LQGFDVMNRR 480 ILDFAGMQQS HANPVLLSGR VKDRFGEFVD STSLDLDRFP RVLQGQEICS LRSFPQIAGF 540 TPASASGSPN PFAYQANKSS FYPLASQGIR SSHIPYQSPY NAGDKSSSRK FDAQREGGLP 600 KNVPFKVNMN ASTTGCKLFG FSLPVETPAS NQQSSSKRIC TKVHKQGSLV GRAIDLSRLN 660 GYNDLLTELE RLFNMEGLLR DPEKGWRILY TDSENDMMVV GDDPWHDFCS VVLKIHLYTK 720 EEVENGNDDN RSCLEQAALM MEASKSSSVS QPDSSPTGH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldy_A | 1e-112 | 45 | 407 | 4 | 357 | Auxin response factor 1 |
4ldy_B | 1e-112 | 45 | 407 | 4 | 357 | Auxin response factor 1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00133089001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN979464 | 0.0 | JN979464.1 Brassica rapa subsp. pekinensis auxin response factor 4 (ARF4) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013612784.1 | 0.0 | PREDICTED: auxin response factor 4 isoform X2 | ||||
Swissprot | Q9ZTX9 | 0.0 | ARFD_ARATH; Auxin response factor 4 | ||||
TrEMBL | A0A0D3ED44 | 0.0 | A0A0D3ED44_BRAOL; Auxin response factor | ||||
STRING | Bo9g143570.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9530 | 26 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60450.1 | 0.0 | auxin response factor 4 |