PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00133049001

Common Name

GSBRNA2T00133049001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

CO-like

Protein Properties

Length: 333aa MW: 37581.7 Da PI: 6.2685

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00133049001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	18.4	4.5e-06	12	44	2	34
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeH 34 + r+C+ +e+ + +C+ ++ lC C + H GSBRNA2T00133049001 12 QHRICDYCESSVALVYCKADSAKLCLACDNQVH 44 6789**************************999 PP
2	zf-B_box	23	1.6e-07	57	99	4	42
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg....Htvvpl 42 C+ +++ + + fC + ++ lC++C ++H + H+++pl GSBRNA2T00133049001 57 LLCDSCDDSPSSVFCDTESSVLCQNCDWQHHTSasslHSRRPL 99 57***************************88668999988875 PP
3	CCT	58.2	2.9e-20	288	330	1	43
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 R+ al+RYk K+k+R++eK+irYesRK++Ae+R R++GrF+k+ GSBRNA2T00133049001 288 RNSALSRYKAKKKSRRYEKHIRYESRKVRAETRTRIRGRFAKS 330 899**************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	10.111	11	58	IPR000315	B-box-type zinc finger
SMART	SM00336	3.1E-12	11	58	IPR000315	B-box-type zinc finger
CDD	cd00021	3.17E-6	14	58	No hit	No description
PROSITE profile	PS50119	10.367	54	99	IPR000315	B-box-type zinc finger
CDD	cd00021	4.95E-7	58	99	No hit	No description
SMART	SM00336	0.3	59	99	IPR000315	B-box-type zinc finger
PROSITE profile	PS51017	14.376	288	330	IPR010402	CCT domain
Pfam	PF06203	2.1E-14	288	330	IPR010402	CCT domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 333 aa Download sequence Send to blast
MEKEEEEGSH QQHRICDYCE SSVALVYCKA DSAKLCLACD NQVHVTNQLF SKHFRSLLCD 60 SCDDSPSSVF CDTESSVLCQ NCDWQHHTSA SSLHSRRPLE GFSGCPSVTE LLALVGLDDL 120 TDKALFLPHP GGGSEQTPPQ IVSLNDLVAS DGSSHNYRAM DVPPLPKNRH ATCGRHKEEM 180 IRQLRELSRS EPSCLKYETL DNDAELDTTG FLFLEPGNDL FSSTFESQVS GLKWFEDQQE 240 DYYPYSDDNN VNQRGCCTQQ QESSPVMVPV STSTTTTRLT HEINSLERNS ALSRYKAKKK 300 SRRYEKHIRY ESRKVRAETR TRIRGRFAKS HP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00133049001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189634	0.0	AC189634.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS004I08, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009142494.1	0.0	PREDICTED: zinc finger protein CONSTANS-LIKE 13
Swissprot	O82256	1e-150	COL13_ARATH; Zinc finger protein CONSTANS-LIKE 13
TrEMBL	A0A3P5Z0C3	0.0	A0A3P5Z0C3_BRACM; Uncharacterized protein
STRING	Bra004423.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8148	27	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47890.1	1e-121	B-box type zinc finger protein with CCT domain

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]