PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00132980001
Common NameGSBRNA2T00132980001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 200aa    MW: 22519.7 Da    PI: 6.154
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00132980001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.23.8e-132160140
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40
                         +g+WT++Ed +lv+ v  +G  +W+ Iar  g++Rt+k+c
  GSBRNA2T00132980001 21 KGPWTEDEDAILVNFVSIHGDARWNHIARSSGLKRTGKSC 60
                         79******************************99*****9 PP
2Myb_DNA-binding29.81.4e-0962842246
                         T-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding 22 gtWktIartmgkgRtlkqcksrwqk 46
                         + W++Ia++++ gRt++++k++w++
  GSBRNA2T00132980001 62 R-WSKIAQYLP-GRTDNEIKNYWRT 84
                         5.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.9E-131561IPR009057Homeodomain-like
PROSITE profilePS5129419.0821690IPR017930Myb domain
SuperFamilySSF466892.1E-171882IPR009057Homeodomain-like
SMARTSM007171.8E-162088IPR001005SANT/Myb domain
PfamPF002491.6E-102160IPR001005SANT/Myb domain
CDDcd001672.25E-132384No hitNo description
Gene3DG3DSA:1.10.10.602.8E-116285IPR009057Homeodomain-like
PfamPF002491.4E-76284IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MEDYEQNSNS PAHEEDSDVR KGPWTEDEDA ILVNFVSIHG DARWNHIARS SGLKRTGKSC  60
NRWSKIAQYL PGRTDNEIKN YWRTRVQKQA KHLRCDVNSN LFKETMKNVW MPRLVERINA  120
QTPSPTYEQV ESMVTDPSQS IDEPSPVEPG FVQFNRNHHC HQQQFVPASD VSATSSNSPA  180
ETSGGATLLR GGSTDPCDF*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in leaves. Expressed in roots and shoots. Expressed at low levels in flowers. {ECO:0000269|PubMed:22301384}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269|PubMed:22301384}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00132980001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt (NaCl). {ECO:0000269|PubMed:16463103}.
UniProtINDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269|PubMed:22301384}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ1441911e-108KJ144191.1 Brassica rapa subsp. chinensis MYB transcription factor (MYB) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013674394.11e-139transcription factor MYB78-like
SwissprotQ10MB42e-47MYB2_ORYSJ; Transcription factor MYB2
SwissprotQ9FGY31e-47MYB78_ARATH; Transcription factor MYB78
TrEMBLA0A397Z7E11e-119A0A397Z7E1_BRACM; Uncharacterized protein
TrEMBLM4CJT91e-119M4CJT9_BRARP; Uncharacterized protein
STRINGBra004473.1-P1e-120(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47190.11e-111myb domain protein 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Yang A,Dai X,Zhang WH
    A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice.
    J. Exp. Bot., 2012. 63(7): p. 2541-56
    [PMID:22301384]
  4. Chen X, et al.
    The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway.
    Plant Cell Physiol., 2014. 55(3): p. 604-19
    [PMID:24399239]
  5. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  6. Lv Y, et al.
    New insights into the genetic basis of natural chilling and cold shock tolerance in rice by genome-wide association analysis.
    Plant Cell Environ., 2016. 39(3): p. 556-70
    [PMID:26381647]
  7. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]