PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSBRNA2T00132904001 | ||||||||
Common Name | GSBRNA2T00132904001, LOC106450494 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | ARF | ||||||||
Protein Properties | Length: 585aa MW: 65836.9 Da PI: 6.9866 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 72.6 | 4.8e-23 | 115 | 216 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 f+k+lt sd++++g +++ +k+a+e+ + + +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD +vF GSBRNA2T00132904001 115 FVKILTASDTSTHGGFSVLRKHATEClppldmtQ--ATPTQELVARDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFL 202 89****************************9543..445569************************************************ PP E-SSSEE..EEEEE- CS B3 84 ldgrsefelvvkvfr 98 + + +++ l+v+v+r GSBRNA2T00132904001 203 RGH-QTGDLRVGVRR 216 644.88889***998 PP | |||||||
2 | Auxin_resp | 97.4 | 2.1e-32 | 242 | 321 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++t+++F v+Y+Pr s+F+++v+k+++a+k+ + +GmRf+m+fe+e+s+er ++Gt+vg+ dl+p +Wp SkWrsL+ GSBRNA2T00132904001 242 ASHAFNTTTMFVVLYKPRI--SQFIISVNKYMAAMKKGFGIGMRFRMRFEGEESPERIFTGTIVGTGDLSP-QWPASKWRSLQ 321 689***************8..9*************************************************.*********97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.96E-39 | 100 | 245 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 8.6E-37 | 109 | 231 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.93E-20 | 114 | 216 | No hit | No description |
SMART | SM01019 | 1.8E-20 | 115 | 218 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.97 | 115 | 218 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.9E-21 | 115 | 216 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 3.3E-29 | 242 | 321 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 6.9E-14 | 458 | 558 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 3.53E-14 | 465 | 549 | No hit | No description |
PROSITE profile | PS51745 | 28.339 | 473 | 565 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0009506 | Cellular Component | plasmodesma | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 585 aa Download sequence Send to blast |
MENVVDDQLY MELWKACAGP LVEVPRYDER VFYFPQGHME QLVASTNQRV VDKDIPVFNL 60 PPKILCRVLN VMLKAEHETD EVYAQITLQP EEDQSEPTSL DPPLTEPAKQ TVDSFVKILT 120 ASDTSTHGGF SVLRKHATEC LPPLDMTQAT PTQELVARDL HGYEWRFKHI FRGQPRRHLL 180 TTGWSTFVTS KRLVAGDAFV FLRGHQTGDL RVGVRRLAKQ QSTMPASVIS SQSMHLGVLA 240 TASHAFNTTT MFVVLYKPRI SQFIISVNKY MAAMKKGFGI GMRFRMRFEG EESPERIFTG 300 TIVGTGDLSP QWPASKWRSL QVQWDESSTV QRPNKVSPWE IEPFLPSTLT TSPTQPHSKS 360 KRSRPIDSSV LEITGSPVAS NFLSSFPKIH EPSPSLKLLF QDPSSERNSN KTEAPATSCC 420 RLFGFDLKSK PASAPNPNDK QQLISVDSNN TGSAKCQDPN SSKDQKQQTS STRSRTKVQM 480 QGTAVGRAVD LTLLRSYDEL IRELEKMFEI EGELRTKDKW AIVFTDDEGD MMLVGDDPWD 540 EFCKMAKKLF IYSSDEVKQM SSKSLLDDEC TMVHLEPDQR TVKL* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-162 | 3 | 344 | 13 | 355 | Auxin response factor 1 |
4ldw_A | 1e-162 | 3 | 344 | 13 | 355 | Auxin response factor 1 |
4ldw_B | 1e-162 | 3 | 344 | 13 | 355 | Auxin response factor 1 |
4ldx_A | 1e-162 | 3 | 344 | 13 | 355 | Auxin response factor 1 |
4ldx_B | 1e-162 | 3 | 344 | 13 | 355 | Auxin response factor 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Bna.22606 | 0.0 | vegetative meristem |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GSBRNA2T00132904001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | JN979476 | 0.0 | JN979476.1 Brassica rapa subsp. pekinensis auxin response factor 11 (ARF11) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013747619.1 | 0.0 | auxin response factor 11 | ||||
Swissprot | Q9ZPY6 | 0.0 | ARFK_ARATH; Auxin response factor 11 | ||||
TrEMBL | A0A397Z603 | 0.0 | A0A397Z603_BRACM; Auxin response factor | ||||
STRING | Bra004530.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7435 | 18 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G46530.1 | 0.0 | auxin response factor 11 |
Link Out ? help Back to Top | |
---|---|
Entrez Gene | 106450494 |
Publications ? help Back to Top | |||
---|---|---|---|
|