PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00132656001

Common Name

GSBRNA2T00132656001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Nin-like

Protein Properties

Length: 810aa MW: 89360.6 Da PI: 6.2257

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00132656001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	90.2	1.6e-28	511	561	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+++l++l+++Fs+++kdAAk+Lgvc+T+LKriCRq+GI RWP+Rki+++ GSBRNA2T00132656001 511 EKNVTLSVLQQHFSGSLKDAAKSLGVCPTTLKRICRQHGIIRWPSRKINKV 561 89***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.79	500	581	IPR003035	RWP-RK domain
Pfam	PF02042	7.2E-27	513	561	IPR003035	RWP-RK domain
SuperFamily	SSF54277	8.83E-22	703	794	No hit	No description
Gene3D	G3DSA:3.10.20.240	2.4E-23	707	788	No hit	No description
SMART	SM00666	2.8E-23	709	791	IPR000270	PB1 domain
PROSITE profile	PS51745	21.172	709	791	IPR000270	PB1 domain
CDD	cd06407	1.92E-36	710	790	No hit	No description
Pfam	PF00564	1.9E-17	710	790	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 810 aa Download sequence Send to blast
MEQPFASRYK GFGYQDIPTA QQMDVLSFGS ADMLNSSSSS ELMNFDSFST WFNTPSPTDL 60 LFSQYGLSTF GATTSSHPPE PRAGLTHINE LSGKRRRVSN QTIPRSLSHS LDEKMLKALS 120 LFIESSSGSG DSILAQIWTP IKAGDQYILS TCDQAYLLDP RLSNYREVSR KFTFASKPNQ 180 CSSSPGLPGR VFISGVREWT SNVRYYKRDE YLRMKHAVDN EVRGSIAIPI LEEASGTSCC 240 AVMELVTSKE KHDFDKEMES VCRALQAVNL RTSEIPRPQY LSSNQREALA EIKDVLRAVC 300 HAHKLPLALA WLPCSNGPNS LVLCVEETAC YVNDMEMEGF VKACLEHCLR EKEGIVGKAF 360 VSNQPSFASD VKVYDIGEYP LVHHARKYGL NAAVAIKLRS TYTGEDDYVL ELFLPISMKG 420 SLEQQLLLDS LSGTLQRICR TLRTVSDVGA TKNEVGREIS NFPQTTCAGN FQTILLDSEL 480 NSTSDMSSDK DNFEQDMSKA RTPEKKKSTT EKNVTLSVLQ QHFSGSLKDA AKSLGVCPTT 540 LKRICRQHGI IRWPSRKINK VNRSLRKIQT VLDSVQGVEG GLRFDSARGE FVAAGPTPKG 600 PSSNGNNACE DTSFELLKAK SVDNAVKLED DIITNDSFMD ASGQQWDWMA EQSGFSGKLS 660 SPVTDGMETT IRSMSDSSNS SGAVVLGSSS TSMDDRNQTR TQGESGSRTL TIKATYREDT 720 IRFKFESSAG CSQLYKEVSK RFKLQEGSFQ LKYLDDEEEW VLMVTDSDLQ ECLEILYGMG 780 KHTVKFLVRD LPAPIGSSGG SNGYLGTGL*

Sequence ? help Back to Top

Protein Sequence Length: 810 aa Download sequence Send to blast

MEQPFASRYK GFGYQDIPTA QQMDVLSFGS ADMLNSSSSS ELMNFDSFST WFNTPSPTDL  60
LFSQYGLSTF GATTSSHPPE PRAGLTHINE LSGKRRRVSN QTIPRSLSHS LDEKMLKALS  120
LFIESSSGSG DSILAQIWTP IKAGDQYILS TCDQAYLLDP RLSNYREVSR KFTFASKPNQ  180
CSSSPGLPGR VFISGVREWT SNVRYYKRDE YLRMKHAVDN EVRGSIAIPI LEEASGTSCC  240
AVMELVTSKE KHDFDKEMES VCRALQAVNL RTSEIPRPQY LSSNQREALA EIKDVLRAVC  300
HAHKLPLALA WLPCSNGPNS LVLCVEETAC YVNDMEMEGF VKACLEHCLR EKEGIVGKAF  360
VSNQPSFASD VKVYDIGEYP LVHHARKYGL NAAVAIKLRS TYTGEDDYVL ELFLPISMKG  420
SLEQQLLLDS LSGTLQRICR TLRTVSDVGA TKNEVGREIS NFPQTTCAGN FQTILLDSEL  480
NSTSDMSSDK DNFEQDMSKA RTPEKKKSTT EKNVTLSVLQ QHFSGSLKDA AKSLGVCPTT  540
LKRICRQHGI IRWPSRKINK VNRSLRKIQT VLDSVQGVEG GLRFDSARGE FVAAGPTPKG  600
PSSNGNNACE DTSFELLKAK SVDNAVKLED DIITNDSFMD ASGQQWDWMA EQSGFSGKLS  660
SPVTDGMETT IRSMSDSSNS SGAVVLGSSS TSMDDRNQTR TQGESGSRTL TIKATYREDT  720
IRFKFESSAG CSQLYKEVSK RFKLQEGSFQ LKYLDDEEEW VLMVTDSDLQ ECLEILYGMG  780
KHTVKFLVRD LPAPIGSSGG SNGYLGTGL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	93	97	KRRRV

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00132656001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013747898.1	0.0	protein NLP8-like
Swissprot	O22864	0.0	NLP8_ARATH; Protein NLP8
TrEMBL	A0A397Z6S0	0.0	A0A397Z6S0_BRACM; Uncharacterized protein
STRING	Bra004767.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2299	27	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]