PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00132574001
Common NameGSBRNA2T00132574001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GRAS
Protein Properties Length: 675aa    MW: 75878 Da    PI: 6.9114
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00132574001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS374.91e-1143006691374
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                          l++lL++cA+av+++d ++a +lL++++++++p gd +qRla++f+++L+arla+++s++yk + +++ s    + +l+a++lf  ++P+
  GSBRNA2T00132574001 300 LRSLLIHCAQAVAADDSRCAGQLLKQIRQHSTPFGDGNQRLAHCFANGLEARLAGTGSQIYKGIVSKPRS---AAAVLKAHQLFLACCPF 386
                          689***************************************************************9999...999************** PP

                 GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178
                           k+s++++N++I + v ++ rvH+iDf+i +G+QWp+L++ ++    g+p++R+Tg++ p++g   ++++eetgerLa +A+++gvpfe+
  GSBRNA2T00132574001 387 RKLSYFITNKTIRDLVGNSPRVHVIDFGILYGFQWPTLIHRFSI--YGKPKVRVTGIEFPQPGfrPTQRVEETGERLAAYAKQFGVPFEY 474
                          *******************************************8..8***************9*************************** PP

                 GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268
                          ++ +ak++++++le+L+++++E ++Vn+ ++ ++l+desv++es+rd+vL+l+ +++P+++v+   +  +n++ F++rf eal ++s++f
  GSBRNA2T00132574001 475 KA-IAKKWDAVQLEDLDIDRDEITVVNCLYRAENLHDESVKVESCRDAVLSLIGKINPDLFVFGIVNGAYNAPFFVTRFREALFHFSSIF 563
                          **.7************************************************************************************** PP

                 GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgsl 358
                          d+le+ +pre+eer+++E e++gre+ nv+aceg er+er et+++W+ r +++G+ +vp++ +++k+  + +++++ + + +++++ +l
  GSBRNA2T00132574001 564 DMLETIVPREDEERMFLEMEVFGREALNVIACEGWERVERPETYKQWHVRAMRSGLVQVPFDPDIMKTSLHKVNTFYHKDFVIDQDNRWL 653
                          *****************************************************************************888********** PP

                 GRAS 359 vlgWkdrpLvsvSaWr 374
                          ++gWk+r+++++S+W+
  GSBRNA2T00132574001 654 LQGWKGRTVMALSVWK 669
                          ***************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098561.352274649IPR005202Transcription factor GRAS
PfamPF035143.5E-112300669IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 675 aa     Download sequence    Send to blast
MITDPAPVDR TRLPDQPSSL TLFDGYNYNH GLSNNQNAFA TSAAGEEEDP ADEFDFSDAV  60
LGYISQILME EDMDDRVCML QESLDLEAAE RSLYEAIGKK YPPSPERSSP YIENLDHVVP  120
AGDRNGSGGG FMSGGMKPMS GGGFTLDFRN PQSRCSPVLS VPQSPYGVHE SWNASRDDQS  180
VWLFRRGVEE DSERNEMIVN FREDSRSKGR RNPNSGEEER CSKLPAVFSE TILRSDVVDK  240
ILVHVPGGES MKEFDALREV LKKGVGKKKA SAPQEGKRRA RGRGRGRGRG GGVKKEVVDL  300
RSLLIHCAQA VAADDSRCAG QLLKQIRQHS TPFGDGNQRL AHCFANGLEA RLAGTGSQIY  360
KGIVSKPRSA AAVLKAHQLF LACCPFRKLS YFITNKTIRD LVGNSPRVHV IDFGILYGFQ  420
WPTLIHRFSI YGKPKVRVTG IEFPQPGFRP TQRVEETGER LAAYAKQFGV PFEYKAIAKK  480
WDAVQLEDLD IDRDEITVVN CLYRAENLHD ESVKVESCRD AVLSLIGKIN PDLFVFGIVN  540
GAYNAPFFVT RFREALFHFS SIFDMLETIV PREDEERMFL EMEVFGREAL NVIACEGWER  600
VERPETYKQW HVRAMRSGLV QVPFDPDIMK TSLHKVNTFY HKDFVIDQDN RWLLQGWKGR  660
TVMALSVWKP ESKA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A9e-4430667225382Protein SCARECROW
5b3h_A1e-4330667224381Protein SCARECROW
5b3h_D1e-4330667224381Protein SCARECROW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1278288RARGRGRGRGR
2280289RGRGRGRGRG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.267592e-71leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in cotyledons, leaves and flowers, and in the elongation zone in root. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00132574001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0046840.0AC004684.3 Arabidopsis thaliana chromosome 2 clone F13M22 map ve018, complete sequence.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013621765.10.0PREDICTED: scarecrow-like protein 9
SwissprotO809330.0SCL9_ARATH; Scarecrow-like protein 9
TrEMBLA0A0D3B5G30.0A0A0D3B5G3_BRAOL; Uncharacterized protein
TrEMBLA0A3P6AC640.0A0A3P6AC64_BRAOL; Uncharacterized protein
STRINGBo3g031890.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.10.0GRAS family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]