PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00132481001

Common Name

GSBRNA2T00132481001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

ERF

Protein Properties

Length: 188aa MW: 20267.6 Da PI: 4.4016

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00132481001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	56.7	5.9e-18	13	64	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 s ykGVr++k++ +Wv+eIr+p r r++lg+f t+e+Aa a++ a+++l+g GSBRNA2T00132481001 13 SLYKGVRQRKNSDKWVSEIREP-----RtpNRIWLGTFSTPEMAAIAYDVAAQALKG 64 57*****************9.....4478*********************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	4.81E-27	13	74	No hit	No description
SuperFamily	SSF54171	2.16E-19	13	74	IPR016177	DNA-binding domain
Pfam	PF00847	2.1E-11	14	64	IPR001471	AP2/ERF domain
SMART	SM00380	4.5E-29	14	78	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	2.3E-26	14	74	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	20.178	14	72	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence Send to blast
MPGTSKENGG RHSLYKGVRQ RKNSDKWVSE IREPRTPNRI WLGTFSTPEM AAIAYDVAAQ 60 ALKGTQTELN FPNSASSFPV PASMSPGDIQ AAAASAAAAF GAARDAIVMA NNNSATSSVE 120 RSNVMMMNGS YEDTYGFMDE DFIFDMPNML MNMAEGMLLS PPRQPTFDAA SDGYGYTGAD 180 DYLWSFP*

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00132481001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC006919	1e-106	AC006919.6 Arabidopsis thaliana chromosome 2 clone F1O11 map g6825, complete sequence.
GenBank	AY560867	1e-106	AY560867.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At2g36450) mRNA, complete cds.
GenBank	CP002685	1e-106	CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
GenBank	DQ446604	1e-106	DQ446604.1 Arabidopsis thaliana clone pENTR221-At2g36450 AP2 domain-containing protein (At2g36450) mRNA, complete cds.
GenBank	DQ653045	1e-106	DQ653045.1 Arabidopsis thaliana clone 0000012250_0000008884 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013647424.1	1e-134	ethylene-responsive transcription factor ERF024-like
Refseq	XP_013647425.1	1e-134	ethylene-responsive transcription factor ERF024-like
Refseq	XP_022549082.1	1e-134	ethylene-responsive transcription factor ERF024-like isoform X2
Swissprot	Q9SJR0	3e-85	ERF24_ARATH; Ethylene-responsive transcription factor ERF024
TrEMBL	A0A3P6ANS4	1e-135	A0A3P6ANS4_BRAOL; Uncharacterized protein
STRING	Bo3g030140.1	1e-119	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6424	25	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36450.1	3e-86	ERF family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]