PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00132397001
Common NameGSBRNA2T00132397001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 204aa    MW: 22469 Da    PI: 6.4042
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00132397001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.47.3e-1856104355
                  AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          ++GVr +  +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+++++g
  GSBRNA2T00132397001  56 FRGVRMRQ-WGKWVSEIREPKK---KSRIWLGTFPTAEMAARAHDVAALAIKG 104
                          8****998.**********854...6**********************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.89355112IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-3255113IPR001471AP2/ERF domain
SMARTSM003806.7E-4055118IPR001471AP2/ERF domain
PfamPF008471.3E-1156104IPR001471AP2/ERF domain
SuperFamilySSF541713.2E-2156113IPR016177DNA-binding domain
CDDcd000185.30E-3356114No hitNo description
PRINTSPR003672.4E-105667IPR001471AP2/ERF domain
PRINTSPR003672.4E-107894IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MDHSSSSESH LDDYRRRSQA KATARAVNNN KNIKKKRVKE EDVDDEKINV SKHQSFRGVR  60
MRQWGKWVSE IREPKKKSRI WLGTFPTAEM AARAHDVAAL AIKGDSAHLN FPELAYHLPR  120
PASADPKDIQ AAAAEAAASV VIDMGIETSS PSTGATELSP PAVASTADDA FSDLPDLLLD  180
VNHKNDGFWE SFPYEEPFFS GSY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-17511121072Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11436RRRSQAKATARAVNNNKNIKKKR
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00132397001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013627358.11e-140PREDICTED: ethylene-responsive transcription factor ERF038-like
SwissprotQ9ZQP35e-83ERF38_ARATH; Ethylene-responsive transcription factor ERF038
TrEMBLA0A3N6R8E61e-146A0A3N6R8E6_BRACR; Uncharacterized protein
STRINGBo3g028500.11e-139(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24922374
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35700.11e-83ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]