PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00132376001
Common NameGSBRNA2T00132376001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family BBR-BPC
Protein Properties Length: 279aa    MW: 30753.7 Da    PI: 10.4761
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00132376001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind241.46.2e-7485278102301
            GAGA_bind 102 lsgtksidslqqlsepqledsave.lreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskae 190
                          ++ t+ id +q    pq e+     l+++  l  +p++e  +++++k  +++  +++k++++k ++kk+  +++k  +k+ s  +++k+e
  GSBRNA2T00132376001  85 VPRTTGIDLSQP---PQAEPAELAmLPQQVRLFPPPTREYINDVEQK--SSTMLSPSKALKPKPQSKKR--SAPKTPKKTLSI-PERKRE 166
                          455555554444...77777777744555556666666555544443..34457788888888887777..445445555554.577888 PP

            GAGA_bind 191 kksidl.vlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydl 279
                           k+ d+ v++  s+D s++P+PvCsCtG++++CYkWG+GGWqS+CCt++iS++PLP+st+r+g+R+agrKmS+ga+ klL +La+eGydl
  GSBRNA2T00132376001 167 EKNPDInVVDISSFDVSGVPPPVCSCTGVPKVCYKWGMGGWQSSCCTISISTFPLPMSTTRPGTRLAGRKMSNGAYVKLLMRLAGEGYDL 256
                          899999789999****************************************************************************** PP

            GAGA_bind 280 snpvDLkdhWAkHGtnkfvtir 301
                            pvDL++hWA+HGtnkfvti+
  GSBRNA2T00132376001 257 TFPVDLRNHWARHGTNKFVTIK 278
                          *********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012268.6E-801278IPR010409GAGA-binding transcriptional activator
PfamPF062174.2E-65126278IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MGLTSSFVIS SGFAKFHSSS SIKIKKSLLF CTLALLREGA ILPLKKAIEM DPYLSRNHMQ  60
PATSTSKDTG FPTSNPHWFH SYFPVPRTTG IDLSQPPQAE PAELAMLPQQ VRLFPPPTRE  120
YINDVEQKSS TMLSPSKALK PKPQSKKRSA PKTPKKTLSI PERKREEKNP DINVVDISSF  180
DVSGVPPPVC SCTGVPKVCY KWGMGGWQSS CCTISISTFP LPMSTTRPGT RLAGRKMSNG  240
AYVKLLMRLA GEGYDLTFPV DLRNHWARHG TNKFVTIK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.83790.0seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in anthers, in pollen grains, in young rosette, in leaf vasculature, in the lateral and primary roots, in embryo sac, and in the whole ovule. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00132376001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018513635.10.0PREDICTED: protein BASIC PENTACYSTEINE7 isoform X2
SwissprotO822861e-112BPC7_ARATH; Protein BASIC PENTACYSTEINE7
TrEMBLA0A3P6A9U20.0A0A3P6A9U2_BRAOL; Uncharacterized protein
STRINGBra023013.1-P1e-180(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136742127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35550.11e-122basic pentacysteine 7
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]