PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00132166001

Common Name

GSBRNA2T00132166001, LOC106385855

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 134aa MW: 14958.1 Da PI: 5.9261

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00132166001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	15.3	3.5e-05	29	69	10	55
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + R d++ ++ + L++l+ + +K + a++L +A++YI+ Lq GSBRNA2T00132166001 29 KERKDKVGERVSALQQLVSPY-----GKTDTASVLLEAMQYIQFLQ 69 567788888999999999998.....9******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	2.1E-9	18	82	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	11.338	19	68	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0043	27	74	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.71E-12	27	86	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.70E-6	29	73	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 134 aa Download sequence Send to blast
MMMENKRSVC SLEESSMKRH KSDLSFSSKE RKDKVGERVS ALQQLVSPYG KTDTASVLLE 60 AMQYIQFLQE QVKVLSAPYL QTSPTITQEE MEEYSLRSRG LCLVPMEYTL GVAQSNGADI 120 WAPVKTPTSP AFQ*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.5659	0.0	seed

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00132166001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013626486.1	1e-94	PREDICTED: transcription factor bHLH113-like
Refseq	XP_013681208.1	1e-94	transcription factor bHLH153
Swissprot	Q7XJU2	3e-83	BH153_ARATH; Transcription factor bHLH153
TrEMBL	A0A0D3B4G3	2e-93	A0A0D3B4G3_BRAOL; Uncharacterized protein
STRING	Bo3g026410.1	4e-94	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3316	27	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G05710.5	1e-85	bHLH family protein

Link Out ? help Back to Top
Entrez Gene	106385855

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]