PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00132125001
Common NameGSBRNA2T00132125001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 781aa    MW: 87486 Da    PI: 8.1401
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00132125001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.95.5e-21126181156
                          TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          r+k +++t++q++ +e+lF+++++p++++r++L+k+lgL  rqVk+WFqNrR++ k
  GSBRNA2T00132125001 126 RKKYHRHTTDQIRHMEALFKETPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIK 181
                          7999************************************************9877 PP
2START227.15.1e-712905191206
                          HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S... CS
                START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla... 77 
                          e+a++a+ e++k+a+++ep+W +s     e++n+de+l++f+++++      +++ea+r++g+v+m++++l ++++d+  qW+e++a   
  GSBRNA2T00132125001 290 EIANRATLEVQKMATSGEPLWLRSLetgrEILNYDEYLKEFPQAQAssfhgrKTIEASRDVGIVFMDAHKLAQSFMDVE-QWKEMFAcli 378
                          5789999************************************999*********************************.********** PP

                          .EEEEEEEECTT.......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEE CS
                START  78 .kaetlevissg.......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgilie 155
                           ka t++vi++g       ga+qlm+ e+q+l+p+vp R+++fvR++rql+ ++wvivdvSv++e+++++   + s+ R++++pSg++ie
  GSBRNA2T00132125001 379 sKAVTVDVIRQGegpsridGAIQLMFGEMQLLTPVVPtREVYFVRSCRQLSPEKWVIVDVSVSVEEDNNStekEGSLLRCRKRPSGCIIE 468
                          *****************************************************************999988878899************* PP

                          EECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                START 156 pksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                          ++snghskvtwveh dl++++++ l+rs+v++gla+ga++wvatlq +ce+
  GSBRNA2T00132125001 469 DTSNGHSKVTWVEHLDLSASTVQPLFRSFVNTGLAFGARHWVATLQLHCER 519
                          *************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-22112177IPR009057Homeodomain-like
SuperFamilySSF466898.77E-20118184IPR009057Homeodomain-like
PROSITE profilePS5007117.815123183IPR001356Homeobox domain
SMARTSM003899.6E-18125187IPR001356Homeobox domain
PfamPF000462.8E-18126181IPR001356Homeobox domain
CDDcd000868.73E-16130181No hitNo description
PROSITE patternPS000270158181IPR017970Homeobox, conserved site
PROSITE profilePS5084843.863281522IPR002913START domain
SuperFamilySSF559614.49E-32284519No hitNo description
CDDcd088756.82E-107285518No hitNo description
SMARTSM002342.5E-80290519IPR002913START domain
PfamPF018524.7E-64290519IPR002913START domain
Gene3DG3DSA:3.30.530.205.9E-8344518IPR023393START-like domain
SuperFamilySSF559614.85E-16548766No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010062Biological Processnegative regulation of trichoblast fate specification
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 781 aa     Download sequence    Send to blast
MFKYLIFNRF WPCFKVIKRG KIKQIKISER MSMAVEMSSK QPTKDFFSSP ALSLSLAGIF  60
RNASSGSTNP EEDFLGRRVA DDEDRTVEMS SENSGPTRSR SEDNLEGEED QEEEDGAGNK  120
GNKRKRKKYH RHTTDQIRHM EALFKETPHP DEKQRQQLSK QLGLAPRQVK FWFQNRRTQI  180
KAIQERHENS LLKAELEKLR EENKAMRESF SKANSSSCPN CGGGGGGGGS PDDLHLENTK  240
LKAELDKLRA ALGRTPYPLQ ASCSDDQHRR VGSLELYTGV FALEKSRIVE IANRATLEVQ  300
KMATSGEPLW LRSLETGREI LNYDEYLKEF PQAQASSFHG RKTIEASRDV GIVFMDAHKL  360
AQSFMDVEQW KEMFACLISK AVTVDVIRQG EGPSRIDGAI QLMFGEMQLL TPVVPTREVY  420
FVRSCRQLSP EKWVIVDVSV SVEEDNNSTE KEGSLLRCRK RPSGCIIEDT SNGHSKVTWV  480
EHLDLSASTV QPLFRSFVNT GLAFGARHWV ATLQLHCERL VFFMATNVPT KDSLGVTTLA  540
GRKSVLKMAQ RMTQSFYRAI AASSYHQWNK ITTKTGQDMR VSSRKNLHDP GEPTGVIVCA  600
SSSLWLPVSP TLLFDFFRDE TRRHEWDALS NGAHVQSIVS LSKGQDRGNS VSIQTVKSRE  660
KSTWVLQDSC TNSYESVVVY APVDINTTQL VIAGHDPSNI QILPCGFSII PDGVESRQLV  720
ISSAQEDRNT QGGSLLTLAL QTLVNQSPAA KLNMESVESV TNLVSVTLHN IKRSLQIEDC  780
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1123127RKRKK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in developing trichomes.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269|PubMed:11844112}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00132125001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by GEM. {ECO:0000269|PubMed:17450124}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF1882100.0KF188210.1 Brassica villosa BVGL2 (BVGL2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013680822.10.0homeobox-leucine zipper protein GLABRA 2
SwissprotP466070.0HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2
TrEMBLD0PSG30.0D0PSG3_BRANA; GL2b
STRINGBo6g079990.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM123702731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.20.0HD-ZIP family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Wu R,Citovsky V
    Adaptor proteins GIR1 and GIR2. I. Interaction with the repressor GLABRA2 and regulation of root hair development.
    Biochem. Biophys. Res. Commun., 2017. 488(3): p. 547-553
    [PMID:28526410]