PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00131633001 | ||||||||
Common Name | GSBRNA2T00131633001, LOC106347901 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 747aa MW: 82195.9 Da PI: 5.935 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.2 | 3.2e-19 | 63 | 118 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t+ q++eLe++F+++++p+ ++r+eL+++l+L+ q+k+WFqN+R+++k GSBRNA2T00131633001 63 KKRYHRHTQRQIQELESFFKECPHPDDKQRKELSRELNLEPLQIKFWFQNKRTQMK 118 688999***********************************************998 PP | |||||||
2 | START | 200.4 | 7.6e-63 | 260 | 479 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....E CS START 1 elaeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....k 78 ela +a++elv++a+ ++p+W + e++n++e+ + f+++ + +++ea+r+s+vv+m++ +lve+l++++ q++ + + GSBRNA2T00131633001 260 ELAVAALEELVTMAQTGDPLWGLNDnlgEILNEEEYFRMFPRGIGpkpigFRSEASRESTVVIMNHINLVEILMNVN-QYSSVFCgivsR 348 57899*****************9999****************999********************************.99999988999* PP EEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCE CS START 79 aetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksngh 161 a tlev+s+g galq+m+ae+q++splvp R+ +f+Ry++q+g+ +w++vdvS+d+ ++ p + R++++pSg+li++++ng+ GSBRNA2T00131633001 349 ALTLEVLSTGiagnynGALQVMTAEFQVPSPLVPtRENYFLRYCKQHGDNTWAVVDVSLDNLRPSP----ITRSRRRPSGCLIQELQNGY 434 ****************************************************************99....7******************* PP EEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 162 skvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 skvtwveh+++++r++h ++++lv++gla+gak+wvatl+rqce+ GSBRNA2T00131633001 435 SKVTWVEHMEVDDRSVHTMYKPLVNTGLAFGAKRWVATLDRQCER 479 *******************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-21 | 47 | 118 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.3E-18 | 53 | 120 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.054 | 60 | 120 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.2E-18 | 61 | 124 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 7.9E-17 | 63 | 118 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.23E-19 | 63 | 121 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 95 | 118 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 41.388 | 251 | 482 | IPR002913 | START domain |
SuperFamily | SSF55961 | 4.88E-35 | 252 | 481 | No hit | No description |
CDD | cd08875 | 6.63E-124 | 255 | 478 | No hit | No description |
SMART | SM00234 | 8.1E-71 | 260 | 479 | IPR002913 | START domain |
Pfam | PF01852 | 1.0E-51 | 261 | 479 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 1.0E-6 | 361 | 478 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 1.31E-22 | 499 | 738 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0009913 | Biological Process | epidermal cell differentiation | ||||
GO:0048825 | Biological Process | cotyledon development | ||||
GO:0090627 | Biological Process | plant epidermal cell differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 747 aa Download sequence Send to blast |
MYHPNMFESH QHMFDMTPKE SGNDLGLTGS REDDFETKSG AEVTMENLLE EELQDPNQRP 60 NKKKRYHRHT QRQIQELESF FKECPHPDDK QRKELSRELN LEPLQIKFWF QNKRTQMKAQ 120 HERHDNSILK ADNDKLRAEN NRYKDALSNA TCPNCGGPAA IGEMSFDEQH LRIENARLRE 180 EIDRISSIAA KYVGKPLLPH SSPSTQLTSS HYIPSRSLGL EVGNFGTNHQ TSFVGEMHGT 240 SDIMRSVSIP CEADKPMIVE LAVAALEELV TMAQTGDPLW GLNDNLGEIL NEEEYFRMFP 300 RGIGPKPIGF RSEASRESTV VIMNHINLVE ILMNVNQYSS VFCGIVSRAL TLEVLSTGIA 360 GNYNGALQVM TAEFQVPSPL VPTRENYFLR YCKQHGDNTW AVVDVSLDNL RPSPITRSRR 420 RPSGCLIQEL QNGYSKVTWV EHMEVDDRSV HTMYKPLVNT GLAFGAKRWV ATLDRQCERL 480 ASSMASNIPT GDLSVITSPE GRKSMLKLAE RMVMSFFSGV GASTAHAWTT LATTGSDDVR 540 VMTRKSMDDP GRPPGIVLSA ATSFWIPVAP KRVFDFLRDE NSRSEWDILS NGGLVQKMAH 600 IANGRDPGNS ISLLRVNDTN SGPSNMLILQ ESCTDVSGSY VIYAPVDMTA MDVVLSGGDP 660 DYVALLPSGF AILPDGGEGG NASAGAEGGG NNRVVVNAGS LLTVAFQIIV DSVPTAKLSL 720 GSVATVNSLI KCTVERIKGA LACDGA* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: First expressed in the apical cell after the first asymmetric division of the zygote. Expressed in all proembryo cells until the eight-cell stage, and then restricted to the protoderm in the 16-cell proembryo. Not detected in the torpedo stage, but reappeared later in the L1 layer of the shoot apical meristem in the mature embryo. After germination, the L1 layer-specific expression pattern is maintained in the vegetative shoot apical meristem, inflorescence, floral meristems, and the young floral organ primordia. Finally, expressed in the protoderm of the ovule primordia and integuments and gradually restricted to the endothelium surrounding the embryo sac. {ECO:0000269|PubMed:10571886, ECO:0000269|PubMed:8989876}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in cell specification and pattern formation during embryogenesis. Binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to PDF2. {ECO:0000269|PubMed:11439135, ECO:0000269|PubMed:12505995}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00131633001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013642975.1 | 0.0 | homeobox-leucine zipper protein MERISTEM L1 isoform X1 | ||||
Refseq | XP_022543250.1 | 0.0 | homeobox-leucine zipper protein MERISTEM L1 isoform X1 | ||||
Refseq | XP_022543251.1 | 0.0 | homeobox-leucine zipper protein MERISTEM L1 isoform X1 | ||||
Refseq | XP_022543252.1 | 0.0 | homeobox-leucine zipper protein MERISTEM L1 isoform X1 | ||||
Swissprot | Q8RWU4 | 0.0 | ATML1_ARATH; Homeobox-leucine zipper protein MERISTEM L1 | ||||
TrEMBL | A0A3P5Z7I2 | 0.0 | A0A3P5Z7I2_BRACM; Uncharacterized protein | ||||
STRING | Bo1g025510.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM491 | 28 | 149 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21750.2 | 0.0 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 106347901 |