PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00131556001
Common NameGSBRNA2T00131556001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Dof
Protein Properties Length: 251aa    MW: 28316.3 Da    PI: 8.6514
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00131556001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof106.31.7e-332177561
               zf-Dof  5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                          + cprC s+ntkfCyynnys+sqPry C++Crr+Wt+GGalr++P+Gg +rk k++
  GSBRNA2T00131556001 21 PRVCPRCSSDNTKFCYYNNYSVSQPRYNCRNCRRFWTHGGALRDIPIGGRARKIKRT 77
                         678**************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074789.0E-221676IPR003851Zinc finger, Dof-type
PROSITE profilePS5088426.6642276IPR003851Zinc finger, Dof-type
PfamPF027012.2E-302276IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102460IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MDKLSVIVKG DHQVNEEKPP PRVCPRCSSD NTKFCYYNNY SVSQPRYNCR NCRRFWTHGG  60
ALRDIPIGGR ARKIKRTSID QPSVSQVASV IQQVNHHHPF SHVRETNEFL EPFCGSSSSV  120
AVGNHFSSLP ETHGDMVFPI QTIPPMDRFD LFDGSFNQGY YGVGFNDMVG NPLMNQSIGG  180
HVDNYNSYRV NQENPNKRNQ SFNNSMNMNH NASTSGSRGY PGIDHMTNNN NKDRNKCVFS  240
SSYHLEKYGP *
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00131556001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013669248.10.0dof zinc finger protein DOF4.4-like
SwissprotQ9SUA93e-73DOF44_ARATH; Dof zinc finger protein DOF4.4
TrEMBLA0A3P5ZK040.0A0A3P5ZK04_BRACM; Uncharacterized protein
STRINGBra013493.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16021789
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21050.16e-70Dof-type zinc finger domain-containing protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]