PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00131390001

Common Name

GSBRNA2T00131390001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

BES1

Protein Properties

Length: 277aa MW: 30050.7 Da PI: 8.4925

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00131390001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	208.8	1.5e-64	2	135	1	146
DUF822 1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasasp 90 ++++r+ptwkErEnnkrRERrRRaiaaki+aGLR +Gn+klpk++DnneVlkALc+eAGw+ve+DGttyrkg+kp++++e ++ s+sasp GSBRNA2T00131390001 2 TSGTRTPTWKERENNKRRERRRRAIAAKIFAGLRIHGNFKLPKHCDNNEVLKALCNEAGWTVEEDGTTYRKGCKPMDRMELMNGSTSASP 91 5899************************************************************************************ PP DUF822 91 esslqsslkssalaspvesysaspksssfpspssldsislasaasllpvlsvlslv 146 +ss+q +sp+ sy++sp+sssfpsp+++ +a+sl+p+l++ls+ GSBRNA2T00131390001 92 CSSYQ--------PSPRGSYNPSPSSSSFPSPTNI----FGDANSLIPWLKNLSSN 135 *........*****************994....34567899999999763 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	6.3E-61	3	132	IPR008540	BES1/BZR1 plant transcription factor, N-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence Send to blast
MTSGTRTPTW KERENNKRRE RRRRAIAAKI FAGLRIHGNF KLPKHCDNNE VLKALCNEAG 60 WTVEEDGTTY RKGCKPMDRM ELMNGSTSAS PCSSYQPSPR GSYNPSPSSS SFPSPTNIFG 120 DANSLIPWLK NLSSNSPSKL PFFHGNSISA PVTPPLARSP TRDQVTIPES GWLSGMQTPQ 180 SGPSSPTFSL VSRNPFFDKA AFTMGDCSSP MWTPGQSGNC SPAIPAGVDQ NSDVPMADGM 240 AAEFAFGMVK PWEGERIHGE CVSEDLELTL GNSRTR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zd4_A	1e-24	6	77	372	443	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B	1e-24	6	77	372	443	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C	1e-24	6	77	372	443	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D	1e-24	6	77	372	443	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.5632	0.0	leaf\| seed

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00131390001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK118850	0.0	AK118850.1 Arabidopsis thaliana At4g18890 mRNA for unknown protein, complete cds, clone: RAFL21-18-A16.
GenBank	AY088379	0.0	AY088379.1 Arabidopsis thaliana clone 6321 mRNA, complete sequence.
GenBank	BT024512	0.0	BT024512.1 Arabidopsis thaliana At4g18890 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009132289.1	0.0	PREDICTED: BES1/BZR1 homolog protein 3
Swissprot	O49404	1e-169	BEH3_ARATH; BES1/BZR1 homolog protein 3
TrEMBL	M4DA49	0.0	M4DA49_BRARP; Uncharacterized protein
STRING	Bra013359.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1917	27	81

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18890.1	1e-152	BES1/BZR1 homolog 3

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]