PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00131362001
Common NameGSBRNA2T00131362001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 253aa    MW: 28179.3 Da    PI: 7.6066
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00131362001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.59.7e-18188240254
                          T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          rk+ +++k+q   Le+ F+++++++ +++  LAk+l+L  rqV vWFqNrRa+
  GSBRNA2T00131362001 188 RKKLRLSKDQSAFLEDSFKEHSTLNPKQKIALAKQLNLRPRQVEVWFQNRRAR 240
                          778899**********************************************8 PP
2HD-ZIP_I/II83.13.9e-27188241154
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARt 54 
                          +kk+rlsk+q+++LE+sF+e+++L+p++K +la++L+l+prqv+vWFqnrRAR 
  GSBRNA2T00131362001 188 RKKLRLSKDQSAFLEDSFKEHSTLNPKQKIALAKQLNLRPRQVEVWFQNRRARL 241
                          69***************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-17172238IPR009057Homeodomain-like
SuperFamilySSF466893.72E-17179241IPR009057Homeodomain-like
PROSITE profilePS5007116.196184244IPR001356Homeobox domain
SMARTSM003893.6E-16186248IPR001356Homeobox domain
PfamPF000464.2E-15188240IPR001356Homeobox domain
CDDcd000866.81E-16188241No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MELALCLGDN TNKFSFMEKP SKTNNNPSAS STSTSDKDLG FNMGLNVLGF GGHRSLSSSS  60
SPSMEDEKDK NKRKLAPKAI DSDGFRVSSS VDPSLQLQLH FPWLPENSRQ GGRISGAATV  120
PEEEEEAALS MSVSPPDSVT SSFRLDFGIK SYGYERRNNK RDIENDEVER STSRASNEDN  180
DDDNGATRKK LRLSKDQSAF LEDSFKEHST LNPKQKIALA KQLNLRPRQV EVWFQNRRAR  240
LAYVIIASFF FL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1186192TRKKLRL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00131362001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013606550.11e-174PREDICTED: homeobox-leucine zipper protein HAT14
RefseqXP_013670853.11e-174homeobox-leucine zipper protein HAT14-like
SwissprotP466651e-113HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLA0A3N6QC331e-173A0A3N6QC33_BRACR; Uncharacterized protein
STRINGBo9g175900.11e-174(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49282852
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.11e-101homeobox from Arabidopsis thaliana
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]