PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00131243001
Common NameGSBRNA2T00131243001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 496aa    MW: 55099.9 Da    PI: 8.2947
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00131243001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA50.33.3e-16741135
                 GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                         C +Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  GSBRNA2T00131243001  7 CYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGS 41
                         ****************88888***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004016.5E-10155IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.76E-11546No hitNo description
CDDcd002025.22E-16655No hitNo description
Gene3DG3DSA:3.30.50.101.0E-12740IPR013088Zinc finger, NHR/GATA-type
PfamPF003205.7E-14741IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.2740IPR000679Zinc finger, GATA-type
PROSITE patternPS003440732IPR000679Zinc finger, GATA-type
PfamPF139198.3E-11270372IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MGKQGPCYHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG SLVNYTPLHS RADGEENKDH  60
QRYQRMKSIS VNNKYKETKT LKRKAIQEPV LEFNYGFKKA VVEEDASNRS SSGSAISNSE  120
SCAQFSSADG SELTGPSQSN AWDTTVPCKR RTCMGLRPKT SSVEKLTQDL YNILQEQQSS  180
VSSGEEDLLF ENEMLSMVSV EIGHGSVLMR NPHSFAREEV SEEASCLSSV ENKSSISDAY  240
SSHSVKRAEI GAERGSVSVG QAVKEEQLKR TKSQNGRVHV LGSHGSPLCS IDLKDIFNFD  300
EFIEQFTEEE QKKLMRLLPQ IDSVNLPDSL RMMFESAQFK ENFSLFQKLI ADGVFEMPSS  360
TSAARLEEMR TFKKLALSDF RKSRLVESYN LLKEGDKGSA TTSRSSNPNV HKNIVTIKRR  420
CENQTQLKSE SRGLMRSPKS VTKMKASHEG NGSCFRPRSL ASVFAQGNCS SDQDLLLLDL  480
PSNGSFPQAE LLHQL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.247470.0root| seed
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00131243001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3532400.0AK353240.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-27-J12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009130778.10.0PREDICTED: GATA transcription factor 26 isoform X2
SwissprotQ8W4H10.0GAT26_ARATH; GATA transcription factor 26
TrEMBLA0A398AJZ60.0A0A398AJZ6_BRACM; Uncharacterized protein
STRINGBra040167.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16062785
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.30.0GATA transcription factor 26
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]