PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00131164001
Common NameGSBRNA2T00131164001, LOC106426789
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 306aa    MW: 35043.4 Da    PI: 6.6703
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00131164001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.44.3e-151462148
                         TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                         +g+W++eEd  l+ +++++G+g +W + ++++g +R++k+c++rw++yl
  GSBRNA2T00131164001 14 KGPWSPEEDAMLKSYIEKHGTGnNWIALPHKIGIKRCGKSCRLRWLNYL 62
                         79*******************************55************97 PP
2Myb_DNA-binding383.7e-1269111246
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          g++T eEd ++  +    G++ W+ Ia+ ++ gRt++++k++w++
  GSBRNA2T00131164001  69 GSFTDEEDYIICSLYITIGSR-WSIIASQLP-GRTDNDIKNYWNT 111
                          78*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.004962IPR017930Myb domain
SMARTSM007173.6E-131364IPR001005SANT/Myb domain
SuperFamilySSF466891.3E-2613109IPR009057Homeodomain-like
PfamPF002492.3E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.0E-251569IPR009057Homeodomain-like
CDDcd001671.11E-91662No hitNo description
PROSITE profilePS5129421.11963117IPR017930Myb domain
SMARTSM007172.7E-1167115IPR001005SANT/Myb domain
PfamPF002491.2E-1069111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-2370117IPR009057Homeodomain-like
CDDcd001673.51E-770113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MGRAPCCDKT VVKKGPWSPE EDAMLKSYIE KHGTGNNWIA LPHKIGIKRC GKSCRLRWLN  60
YLRPNIKHGS FTDEEDYIIC SLYITIGSRW SIIASQLPGR TDNDIKNYWN TRLKKKLLSK  120
QGKAIHQQLS LRLEPETTSK RSSFSQNQIL MFHDENAKPP LHQTLHNQMV DPSITSFAME  180
EKRMVPVLES FSWEQNKVWL DIDHDAASSS YHHHASPHLN SMTTSSSSIC TNSPLQMSHY  240
TINDNDHGDQ EMFFMAGLEN LQDELFDEII NNNTTEFEFR GTETLNNNCL GHEINSFIDC  300
PLKDN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-25141177108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, leaves, internodes, shoot tips and flowers. {ECO:0000269|PubMed:16461581}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions as regulator of genes affecting cell wall organization and remodeling. Activates genes related to the primary cell wall and represses genes related to the secondary cell wall and expansins. Required for the regulation of longitudinal cell growth in stems, leaves, petioles, roots, flowers and siliques. {ECO:0000269|PubMed:24563287}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00131164001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1891830.0AC189183.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB001A20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013589662.10.0PREDICTED: transcription factor RAX3
RefseqXP_013722975.10.0transcription factor MYB87
SwissprotF4JSU01e-157MYB87_ARATH; Transcription factor MYB87
TrEMBLA0A0D3A1650.0A0A0D3A165_BRAOL; Uncharacterized protein
TrEMBLA0A3P6FL800.0A0A3P6FL80_BRAOL; Uncharacterized protein
STRINGBo1g003420.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37780.11e-146myb domain protein 87
Publications ? help Back to Top
  1. Fujiwara S, et al.
    Chimeric repressor analysis identifies MYB87 as a possible regulator of morphogenesis via cell wall organization and remodeling in Arabidopsis.
    Biotechnol. Lett., 2014. 36(5): p. 1049-57
    [PMID:24563287]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]