PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00131111001
Common NameGSBRNA2T00131111001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 307aa    MW: 32823.4 Da    PI: 8.1302
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00131111001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.71.5e-191358147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                         +g+W++eEd+ll  +v+++G+++W++I++ ++ gR++k+c++rw + 
  GSBRNA2T00131111001 13 KGPWSPEEDDLLQSLVQKHGPRNWSLISKSIP-GRSGKSCRLRWCNQ 58
                         79******************************.***********985 PP
2Myb_DNA-binding551.9e-1767109347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          ++T+eEde +++a++++G++ W+tI+r ++ gRt++ +k++w++ 
  GSBRNA2T00131111001  67 AFTAEEDETIIRAHARFGNK-WATISRLLN-GRTDNAIKNHWNST 109
                          79******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.679863IPR017930Myb domain
SuperFamilySSF466891.35E-3110106IPR009057Homeodomain-like
SMARTSM007173.4E-171261IPR001005SANT/Myb domain
PfamPF002491.5E-191358IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-261466IPR009057Homeodomain-like
CDDcd001671.68E-161557No hitNo description
SMARTSM007171.7E-1464112IPR001005SANT/Myb domain
PROSITE profilePS5129420.47565114IPR017930Myb domain
PfamPF002498.3E-1567109IPR001005SANT/Myb domain
CDDcd001677.24E-1267110No hitNo description
Gene3DG3DSA:1.10.10.602.1E-2267113IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010200Biological Processresponse to chitin
GO:0046686Biological Processresponse to cadmium ion
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MSGPSRKNME RIKGPWSPEE DDLLQSLVQK HGPRNWSLIS KSIPGRSGKS CRLRWCNQLS  60
PEVEHRAFTA EEDETIIRAH ARFGNKWATI SRLLNGRTDN AIKNHWNSTL KRKCSGFTSE  120
GQSCDFGGNG GYDGNLGEEQ PLKRTASGGG VSTGLYMSPG SPSGSDVSEQ SSGAPHVFKP  180
TARSGAVTEV TASTSGEDPP TYLSLSLPWN NRCETETVRV NEPTQVNENT GISGFGGEFM  240
TVVQEMIRTE VRSYMADLQR GNVGGGGSSG GSGGGGGGSC MPQSVNSRRV GFREFIVNQI  300
GIGKME*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A7e-41101141105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.117750.0microspore| root| seed
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00476DAPTransfer from AT4G37260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00131111001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC9667420.0KC966742.1 Brassica napus MYB transcription factor 73 (MYB73.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013595822.10.0PREDICTED: transcription factor MYB44
SwissprotO231601e-179MYB73_ARATH; Transcription factor MYB73
TrEMBLA0A3P6FLB30.0A0A3P6FLB3_BRAOL; Uncharacterized protein
STRINGBo1g004900.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67728135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.11e-170myb domain protein 73
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]