PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00131067001
Common NameGSBRNA2T00131067001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TALE
Protein Properties Length: 668aa    MW: 73401.6 Da    PI: 7.1537
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00131067001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.72.2e-094594961954
                          HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          Fe   ++yps +++  LA+++gL+ +qV++WF N R +
  GSBRNA2T00131067001 459 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 496
                          664559******************************88 PP
2BELL122.12.4e-39317388172
                 BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                          +r e+q++k+kLl++leeVd+rY++y+eq+q+v++sF++v+g+g+a pYt+lA+ka+SrhFrcLkda+a q+
  GSBRNA2T00131067001 317 DRIEHQRRKVKLLTMLEEVDRRYNHYCEQMQMVVNSFDIVMGHGAAIPYTALAQKAMSRHFRCLKDAVAAQL 388
                          589******************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.1E-76243386IPR006563POX domain
PfamPF075261.5E-51248385IPR006563POX domain
PROSITE profilePS5007112.568437500IPR001356Homeobox domain
SMARTSM003891.2E-9440504IPR001356Homeobox domain
CDDcd000864.20E-12440501No hitNo description
SuperFamilySSF466892.91E-17441507IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.7E-29443506IPR009057Homeodomain-like
PfamPF059203.3E-18457496IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009965Biological Processleaf morphogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 668 aa     Download sequence    Send to blast
MSQDYHHQQH QGGFFSFSNG FNRSDSPNLT HQEKQEHQRV LDMDEESSVA RSGIPVYEPA  60
GMLSEMFNFH RSSGGGGGGG GGDFDHSQSF PSNRQLLEQQ HQNIPAMNSA AGMQLFLPQQ  120
PPSTRSHHGS STLHMLLPNP SHHQGYTNTM SMHQLPHQQL TWQSSSDHHH HHHHHHNIGT  180
VHVENSGGQG LSLSLSSSLE AAVKAEEYRK FYYGSNLSSH HQYNEVSNHF LSSPAAASSS  240
SSIGAINILR NSRYTKVAQE LLEEFCSVGR GFSKKNKPKN KSNPNTSGGD GSSSGGAGGS  300
PSSAGASKDH PPLSASDRIE HQRRKVKLLT MLEEVDRRYN HYCEQMQMVV NSFDIVMGHG  360
AAIPYTALAQ KAMSRHFRCL KDAVAAQLRQ SCELLGEKDA AGLSSSGLTK GDTPRLRLLE  420
QSLRQQRAFH QMGMMEQEAW RPQRGLPERS VNILRAWLFE HFLHPYPSDA DKHLLARQTG  480
LSRNQVSNWF INARVRLWKP MVEEMYQQES KEREENEQED QETKNNSSND KSTKSNNNES  540
NFTAVRTTSQ TPTTAAQSAA TPPDAGHRLR SAADINAYEN DPSSFSHSNA AAAVVSSYGG  600
STAFSAIATC QQGVGGFDDA DMDGDNNVIR FGTTNPTGDV SLTLGLRHAG NIPDKNASFC  660
VRDFGGF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A7e-17446503158Homeobox protein Meis1
4xrs_B7e-17446503158Homeobox protein Meis1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in lateral organs. {ECO:0000269|PubMed:17873098}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00131067001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013596914.10.0PREDICTED: BEL1-like homeodomain protein 2
SwissprotQ9SW800.0BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBLA0A3P6FFH00.0A0A3P6FFH0_BRAOL; Uncharacterized protein (Fragment)
STRINGBo1g005330.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21662466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36870.20.0BEL1-like homeodomain 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]