PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00131048001
Common NameGSBRNA2T00131048001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 218aa    MW: 25069.1 Da    PI: 5.4753
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00131048001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.53.1e-2057110457
                          -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
             Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                          ++++t+eq++ Le  F  ++++  e++ +LA++lgL+ rqV vWFqNrRa++k+
  GSBRNA2T00131048001  57 KRKLTDEQVNMLEMSFGDEHKLESERKDKLAAELGLDPRQVAVWFQNRRARWKN 110
                          4589************************************************95 PP
2HD-ZIP_I/II123.51e-3956146292
          HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                          +kr+l++eqv++LE+sF  e+kLe+erK +la eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+++d+++ +++rLe+e  +L+e+l
  GSBRNA2T00131048001  56 RKRKLTDEQVNMLEMSFGDEHKLESERKDKLAAELGLDPRQVAVWFQNRRARWKNKRLEEEYNKLKNSHDNVVVDKCRLESELLRLKEQL 145
                          8***************************************************************************************99 PP

          HD-ZIP_I/II  92 k 92 
                           
  GSBRNA2T00131048001 146 Y 146
                          7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003897.4E-2054115IPR001356Homeobox domain
PROSITE profilePS5007116.60156111IPR001356Homeobox domain
CDDcd000862.07E-1656112No hitNo description
SuperFamilySSF466892.4E-1857121IPR009057Homeodomain-like
PfamPF000461.7E-1757110IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.7E-2158118IPR009057Homeodomain-like
PRINTSPR000316.0E-68291IPR000047Helix-turn-helix motif
PROSITE patternPS00027086109IPR017970Homeobox, conserved site
PRINTSPR000316.0E-691107IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MNHTLDDQNM AFISQLYPDV YTQIVPQQGE VKPPKRRRKK SKAAVASGDG SNCLFRKRKL  60
TDEQVNMLEM SFGDEHKLES ERKDKLAAEL GLDPRQVAVW FQNRRARWKN KRLEEEYNKL  120
KNSHDNVVVD KCRLESELLR LKEQLYDAER EIQRLAERVE GGSSNSPVSS SVSVEANGTP  180
FFGDYKVGDD GDDYSNLFYP VPENIYIDGA EWMNLYI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13758RKKSKAAVASGDGSNCLFRKRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.79350.0flower
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, flowers and siliques. {ECO:0000269|PubMed:16055682}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00131048001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895491e-131AC189549.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH005C21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013583998.11e-161PREDICTED: homeobox-leucine zipper protein ATHB-40
SwissprotO232081e-134ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40
TrEMBLA0A0D3A1G91e-159A0A0D3A1G9_BRAOL; Uncharacterized protein
STRINGBo1g005450.11e-160(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22082677
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.11e-110homeobox protein 40
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]