PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00131039001 | ||||||||
Common Name | GSBRNA2T00131039001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB_related | ||||||||
Protein Properties | Length: 80aa MW: 9181.08 Da PI: 8.959 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32.3 | 2.3e-10 | 11 | 55 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 +WT E +l+ +a + + + +W+ Iar +g g+++++++ ++ GSBRNA2T00131039001 11 SWTRKENKLFERALAIYEQDtpdRWHNIARAVG-GKSAEEVRRHYE 55 7******************9*************.**********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 11.915 | 7 | 62 | IPR017884 | SANT domain |
SMART | SM00717 | 4.8E-10 | 8 | 60 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-6 | 10 | 64 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.2E-8 | 11 | 55 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.87E-8 | 11 | 58 | No hit | No description |
SuperFamily | SSF46689 | 6.06E-14 | 11 | 65 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 80 aa Download sequence Send to blast |
MASNSMSSNT SWTRKENKLF ERALAIYEQD TPDRWHNIAR AVGGKSAEEV RRHYELLVRD 60 VNDIESGRYP HPTYRSNGN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 5e-29 | 1 | 78 | 1 | 77 | RADIALIS |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.15195 | 1e-101 | seed |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed just outside the vascular bundles in the rosette stem and the leaf traces. Not detected in floral primordia. {ECO:0000269|PubMed:17672842}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00131039001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189373 | 1e-127 | AC189373.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB048F07, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013588727.1 | 2e-53 | PREDICTED: protein RADIALIS-like 3 | ||||
Swissprot | Q6NNN0 | 1e-43 | RADL3_ARATH; Protein RADIALIS-like 3 | ||||
TrEMBL | A0A0D3A1I1 | 4e-52 | A0A0D3A1I1_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6FTM5 | 4e-52 | A0A3P6FTM5_BRAOL; Uncharacterized protein | ||||
STRING | Bo1g005570.1 | 6e-53 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM221 | 28 | 198 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.2 | 4e-36 | RAD-like 6 |
Publications ? help Back to Top | |||
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